View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_low_10 (Length: 264)
Name: NF7921_low_10
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_low_10 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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| [»] scaffold0024 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 41736822 - 41737069
Alignment:
| Q |
17 |
aggttggttgtgaagaaaagcaataatgttcaaaacaatggggttagagtaattgtggttgatcgaaatggaaagggagattctaaaactgttcaaggtg |
116 |
Q |
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| T |
41736822 |
aggttggttgtgaagaaaagcaataatgttcaaaacaatgtggttagagtaattgtggttgatcgaaatggaaagggagattctaaaactgttcaaggtg |
41736921 |
T |
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| Q |
117 |
cagttgatttggttcctaatggaaacaaacaaagagtcaaaatctacatttttccaggaacttacaggtatgtaattacgtagtaannnnnnnnnatatg |
216 |
Q |
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| T |
41736922 |
cagttgatttggttcctaatggaaacaaacaaagagtcaaaatctacatttttccaggaacttacaggtatgtaattacgtagtaatttttttttatatg |
41737021 |
T |
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| Q |
217 |
tagaaaactatgaagcgccaacacagacaccagacacgacactgacac |
264 |
Q |
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| T |
41737022 |
tagaaaactatgaagcgccaatacagacaccagacacgacactgacac |
41737069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 9379 - 9339
Alignment:
| Q |
224 |
ctatgaagcgccaacacagacaccagacacgacactgacac |
264 |
Q |
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| T |
9379 |
ctatgaagcaccaacgcagacaccagacacgacactgacac |
9339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 18212 - 18171
Alignment:
| Q |
223 |
actatgaagcgccaacacagacaccagacacgacactgacac |
264 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||| |
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| T |
18212 |
actatgaagcgcacacacggacaccagacacgacactgacac |
18171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 21047 - 21087
Alignment:
| Q |
224 |
ctatgaagcgccaacacagacaccagacacgacactgacac |
264 |
Q |
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||||||||| || ||||||||||||||||||||| |||||| |
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| T |
21047 |
ctatgaagcaccgacacagacaccagacacgacattgacac |
21087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 8203726 - 8203766
Alignment:
| Q |
224 |
ctatgaagcgccaacacagacaccagacacgacactgacac |
264 |
Q |
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||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
8203726 |
ctatgaagcaccaacacatacaccaaacacgacactgacac |
8203766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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