View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_low_12 (Length: 231)
Name: NF7921_low_12
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 16004683 - 16004842
Alignment:
| Q |
59 |
tcatatttaagctgtaacattcaaatatttcatgaattgagtttgattgtagttggaagcaacggcagcaggaggtgtgttccccgggcacccgcgcact |
158 |
Q |
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| T |
16004683 |
tcatatttaagctgtaacattcaaatatttcatgaattgagtttgattgtagttggaagcaacggcggcaggaggtgtgttcccagggcacccgcgcact |
16004782 |
T |
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| Q |
159 |
tgacaaggagcacctttcaccattacgcaaacacatgtttcgtataatattggaccacca |
218 |
Q |
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| T |
16004783 |
tgacaaggagcacctttcaccattacgcaaacacatgtttcgtataatattggaccacca |
16004842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16004539 - 16004601
Alignment:
| Q |
1 |
aattcttatacatcaatattacaataaagcatcatgcatatatcctcagcacaaaaactcata |
63 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16004539 |
aatttttatacatcaatattacaataaagcatcatgcatatatcctcagcacaaaaactcata |
16004601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 48818849 - 48819005
Alignment:
| Q |
63 |
atttaagctgtaacattcaaatatttcatgaattgagtttgattgtagttggaagcaacg------gcagcaggaggtgtgttccccgggcacccgcgca |
156 |
Q |
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| T |
48818849 |
atttaagttgtaacattcaaatatttcatgaaatgaggttcagtgtagttggcagcagcaaaggcagcagcaggaggtgtgttccccggacatccacgaa |
48818948 |
T |
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| Q |
157 |
cttgacaaggagcacctttcaccattacgcaaacacatgtttcgtataatattggac |
213 |
Q |
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| T |
48818949 |
cttgacagggagcaccgttcaccatttcacaaacacatgtttcgtataacattggac |
48819005 |
T |
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