View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_low_13 (Length: 222)
Name: NF7921_low_13
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 4124224 - 4124033
Alignment:
| Q |
15 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggcagcatcatttggtca |
114 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||| |
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| T |
4124224 |
cagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatggtgttattatatggtca |
4124125 |
T |
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| Q |
115 |
acaaacatttcaacttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcaattctggagcaacaatctg |
206 |
Q |
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| T |
4124124 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaatctg |
4124033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 4134769 - 4134578
Alignment:
| Q |
15 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggcagcatcatttggtca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
4134769 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtatcatcatttggtca |
4134670 |
T |
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| Q |
115 |
acaaacatttcaacttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcaattctggagcaacaatctg |
206 |
Q |
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| T |
4134669 |
acaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaatctg |
4134578 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 4145571 - 4145380
Alignment:
| Q |
15 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggcagcatcatttggtca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4145571 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggcagcatcatttggtca |
4145472 |
T |
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| Q |
115 |
acaaacatttcaacttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcaattctggagcaacaatctg |
206 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| ||||||||||||||||||||||| |
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| T |
4145471 |
acaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaatctg |
4145380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 4153574 - 4153383
Alignment:
| Q |
15 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggcagcatcatttggtca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || || |||||| |
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| T |
4153574 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatggtgttattatatggtca |
4153475 |
T |
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| Q |
115 |
acaaacatttcaacttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcaattctggagcaacaatctg |
206 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
4153474 |
acaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagcaacaatctg |
4153383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 4163933 - 4163739
Alignment:
| Q |
15 |
cagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggcagcatcatttggtca |
114 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
4163933 |
cagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatttggtca |
4163834 |
T |
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| Q |
115 |
acaaacattt------caacttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcaattctggagcaacaat |
203 |
Q |
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|||| ||||| ||| ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || ||||||||| || ||||||| |
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| T |
4163833 |
acaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctagatcaacaat |
4163739 |
T |
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