View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_low_3 (Length: 409)
Name: NF7921_low_3
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 31180700 - 31181079
Alignment:
| Q |
13 |
aatattcaggtatctttaaatcggcttatttgtatttatctattgaaataaacaattgtgacgttgtttgtggaaacttctgagaacatattatgatatg |
112 |
Q |
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| T |
31180700 |
aatattcaggtatctttaaatcggcttatttgtatttatctattgaaataaacaattgcgatgttgtttgtggaaacttctgagaacatattatgatatg |
31180799 |
T |
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| Q |
113 |
ttcataagttgttttcaacttatgttaattagttatcggtgataattcaagaaaatatttaaattgcatgttcctgatcaaatgaagacaataaaccatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31180800 |
ttcataagttgttttcaacttatgttaattagttatcggtgataattcaagaaaacatttaaattgcatgttcctgatcaaatgaagacaataaaccatt |
31180899 |
T |
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| Q |
213 |
tgttccttaagctccaaggtaccaaatgaatatttgtaaaaagctgcctaacaaaaataaaatctgtttccaaaccaaaaatgattccaattcttttgaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31180900 |
tgttccttaagctccaaggtaccaaatgaatatttgtaaaaagctgcctaacaataataaaatctgtttccaaaccaaaaatgattccaattcttttgaa |
31180999 |
T |
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| Q |
313 |
cagccagctcaatagctcaaatagcccccattagctctgctagaagggaacaatgaaccgggatgatagctggagccttt |
392 |
Q |
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| T |
31181000 |
cagccagctcaatagctcaaatagcccccattagctctgctagaagggaacaatgaaccgggatgatagctggagccttt |
31181079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 4549937 - 4549889
Alignment:
| Q |
87 |
aacttctgagaacatattatgatatgttcataagttgttttcaacttat |
135 |
Q |
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| T |
4549937 |
aacttctgaaaacagattatgacatgttcataagttgttttcagcttat |
4549889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 29007713 - 29007745
Alignment:
| Q |
103 |
ttatgatatgttcataagttgttttcaacttat |
135 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
29007713 |
ttatgatatgttcataagttgttttcagcttat |
29007745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 47917309 - 47917277
Alignment:
| Q |
103 |
ttatgatatgttcataagttgttttcaacttat |
135 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
47917309 |
ttatgacatgttcataagttgttttcaacttat |
47917277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 49202710 - 49202672
Alignment:
| Q |
111 |
tgttcataagttgttttcaacttatgttaattagttatc |
149 |
Q |
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| T |
49202710 |
tgttcataagttgttttcaacttattttcattagttatc |
49202672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 29263443 - 29263411
Alignment:
| Q |
103 |
ttatgatatgttcataagttgttttcaacttat |
135 |
Q |
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| T |
29263443 |
ttatgatatgttcataagttgttttcagcttat |
29263411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 30573857 - 30573946
Alignment:
| Q |
49 |
tatctattgaaataaacaattgtgacgttgtttgtggaaacttctgagaacatattatgatatgttcataagttgttttcaacttatgtt |
138 |
Q |
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| T |
30573857 |
tatctactgacataagcacttgtgagtttgtttgtgagaacttatgaaaacaaattatggcatgttcataagctgttttcagcttatgtt |
30573946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 15402820 - 15402852
Alignment:
| Q |
97 |
aacatattatgatatgttcataagttgttttca |
129 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
15402820 |
aacaaattatgatatgttcataagttgttttca |
15402852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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