View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_low_6 (Length: 356)
Name: NF7921_low_6
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 182 - 345
Target Start/End: Original strand, 41020250 - 41020413
Alignment:
| Q |
182 |
tggtatttgaccttctaaataataggcctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacgacctaga |
281 |
Q |
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| T |
41020250 |
tggtatttgaccctctaaataataggtctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacgacctagg |
41020349 |
T |
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| Q |
282 |
ttatgttttgtataatcaaattgaaaagatgtacgaattgatggcataaaacatagctgttcat |
345 |
Q |
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| T |
41020350 |
ttatgttttgtataatcaaattgaaaagatgtacgaattgatggcataaaacatagctgttcat |
41020413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 22876979 - 22877073
Alignment:
| Q |
181 |
gtggtatttgaccttctaaataataggcctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacga |
275 |
Q |
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| T |
22876979 |
gtggtatttagccctctaaataataggtctctttagtcgttttagcaagttactaagcttaataatatttcttattcttatcataattccgacga |
22877073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41020070 - 41020171
Alignment:
| Q |
1 |
tatttcatcttttgttacataaatgatttttaaaagattaacttggggacccaaatatgttattttagtttgaaacttaaaaaattaatttgggaattct |
100 |
Q |
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| T |
41020070 |
tatttcatcttttgttacataaatgatttttaaaagattaa-tttgggatccaaatatgttattttagtttgaaacttaaagaattaacttagaaattct |
41020168 |
T |
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| Q |
101 |
gtc |
103 |
Q |
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||| |
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| T |
41020169 |
gtc |
41020171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 22876800 - 22876901
Alignment:
| Q |
1 |
tatttcatcttttgttacataaatgatttttaaaagattaacttggggacccaaatatgttattttagtttgaaacttaaaaaattaatttgggaattct |
100 |
Q |
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|||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||||| ||||| ||| ||||||| |
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| T |
22876800 |
tatttcatcttttgttacattaatgatttttaaaggactaacttggg-acccaaatatgtcattttagtttgaaacttaaaggattaacttgagaattct |
22876898 |
T |
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| Q |
101 |
gtc |
103 |
Q |
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||| |
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| T |
22876899 |
gtc |
22876901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 11113712 - 11113763
Alignment:
| Q |
52 |
caaatatgttattttagtttgaaacttaaaaaattaatttgggaattctgtc |
103 |
Q |
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||||||||| ||||||||||||||||||||| | || |||||||||| |||| |
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| T |
11113712 |
caaatatgtcattttagtttgaaacttaaaagactagtttgggaattttgtc |
11113763 |
T |
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