View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7921_low_7 (Length: 310)
Name: NF7921_low_7
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_low_7 |
 | |
|
| [»] chr3 (25 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
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|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 8455054 - 8455347
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455054 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
8455153 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
8455154 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccat |
8455253 |
T |
|
| Q |
217 |
atatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcc |
310 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455254 |
atatgctcgactcatccacgagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcc |
8455347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 8590129 - 8590422
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8590129 |
atcaaaagattcagaaacatagacccatgctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatc |
8590228 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8590229 |
cctcctaaaccgactatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccat |
8590328 |
T |
|
| Q |
217 |
atatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
8590329 |
atatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcgttactagcacagggaccttctcc |
8590422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 6736384 - 6736683
Alignment:
| Q |
11 |
aaaaatatcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggtttta |
110 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6736384 |
aaaaacatcgaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttc |
6736483 |
T |
|
| Q |
111 |
cccatccctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctc |
210 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6736484 |
cccatccctcctaaacccactatgctaattattggaacctggttgccactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctc |
6736583 |
T |
|
| Q |
211 |
taccatatatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcc |
310 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
6736584 |
taccatatatgcttgactcatccaggagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattactagcactaggaccttctcc |
6736683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 6554073 - 6553774
Alignment:
| Q |
11 |
aaaaatatcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggtttta |
110 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6554073 |
aaaaacatcgaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttc |
6553974 |
T |
|
| Q |
111 |
cccatccctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctc |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
6553973 |
cccatccctcctaaacccactatgctgattattggaacccggttgccaccgtcattgccttcaagtaaaaacttgattaatttttccttatcaacatccc |
6553874 |
T |
|
| Q |
211 |
taccatatatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcc |
310 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
6553873 |
taccatatatgcttgactcatccacgagagctgtagacgacaacctttttgaaggtttccaactgactaagccttcattactagcactaggaccttctcc |
6553774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 6947669 - 6947962
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6947669 |
atcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatc |
6947768 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
6947769 |
cctcctaaacccactatgctgattattggaacctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccat |
6947868 |
T |
|
| Q |
217 |
atatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcc |
310 |
Q |
| |
|
||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
6947869 |
atatggttgactcatccatgagagctgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcgcaaggactttctcc |
6947962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 6479611 - 6479320
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6479611 |
atcataagattctgaaacatagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatc |
6479512 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| | ||||| |||||||||||||||||||| ||||| |||| |||||| ||||||||||| |||| |
|
|
| T |
6479511 |
cctcctaaaccaactatgctgattatcggaacctgggttccactgtcattgcctgcaagtaaaaatttgataagttcttccttgtcaacatctctgccat |
6479412 |
T |
|
| Q |
217 |
atatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttct |
308 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
6479411 |
atatgctggactcatccacgagagccgtagatgacaatctttttgaaggtttccaactgactaagccttcattactagcactgggaccttct |
6479320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 6519791 - 6519504
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| ||| | | ||||||||||||||||||||| |
|
|
| T |
6519791 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccatt |
6519692 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||| || | |||||||||||||| ||||||||||||| |
|
|
| T |
6519691 |
cctcctaaacccactatgctgattattggaacctggttaccactggtattgtctgcaagtaaaagtttcactagtttttccttatgaacatctctaccac |
6519592 |
T |
|
| Q |
217 |
atatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggacc |
304 |
Q |
| |
|
||| ||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6519591 |
ataagcttgactcatccacaagagatgtagatgacaatcgttttgaaggtttccaactgactaagccttcattactagcacaaggacc |
6519504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 6448411 - 6448286
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6448411 |
atcaaaatattctgaaacatagacccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatc |
6448312 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattat |
142 |
Q |
| |
|
|| || | ||| |||||||||||||| |
|
|
| T |
6448311 |
ccacccagacccactatgctgattat |
6448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 5250569 - 5250798
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| |||||| |||||| |||||| ||||| |||||||| |
|
|
| T |
5250569 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccatt |
5250668 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
|| || | ||| ||||||||||||||||| || || |||||||| | || | | |||||||| | |||| | ||||| ||| |||||||||||| |
|
|
| T |
5250669 |
ccaccgagacccactatgctgattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccat |
5250768 |
T |
|
| Q |
217 |
atatgctcgactcatccacaagagctgtag |
246 |
Q |
| |
|
|||||||||| |||||||| | |||||||| |
|
|
| T |
5250769 |
atatgctcgattcatccaccaaagctgtag |
5250798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 5299134 - 5299413
Alignment:
| Q |
20 |
aaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccct |
119 |
Q |
| |
|
||||| ||| |||||||||||||| ||||| |||||||| || | || |||| |||||| |||||||||||| | ||||||||||||||| ||||| || |
|
|
| T |
5299134 |
aaaagtttccgaaacatagacccaggcttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattcca |
5299233 |
T |
|
| Q |
120 |
cctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccatata |
219 |
Q |
| |
|
|||| ||| ||||||||||||||||| || ||| |||| ||| || | | ||||||||| ||| ||| || || || ||| ||||||| ||||||| |
|
|
| T |
5299234 |
cctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatata |
5299333 |
T |
|
| Q |
220 |
tgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaa |
299 |
Q |
| |
|
||||||| |||||||| | || |||| || ||| |||||| ||| |||||||| |||| |||||||| ||||||||| |
|
|
| T |
5299334 |
tgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaa |
5299413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 4388566 - 4388426
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||||||||||||||| || ||| || ||||||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
4388566 |
atcaaaagtttctgaaacgtagacccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccatt |
4388467 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgcc |
157 |
Q |
| |
|
|| || | ||| ||||||||||||||||| || |||||||| |
|
|
| T |
4388466 |
ccaccgagacccactatgctgattattggtacttggttgcc |
4388426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 8568577 - 8568359
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||| |||| || |||||||| ||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
8568577 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatc |
8568478 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
|| |||| ||| || || || |||| || |||||||||| ||||||| || ||| ||| | ||||||| ||| | |||||| |||||||||||| |
|
|
| T |
8568477 |
ccacctagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
8568378 |
T |
|
| Q |
217 |
atatgctcgactcatccac |
235 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
8568377 |
atatgcaagattcatccac |
8568359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 5268456 - 5268739
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||| ||| ||||| |||||| ||| | | |||||||||||| || | |||||||||||| |||||||| |
|
|
| T |
5268456 |
atcaaaaatttccgaaacatagacccaggctttatgtttaaaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtcttacccatt |
5268555 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctctaccat |
216 |
Q |
| |
|
|| || | ||| ||||||||||||||||| || |||||||| | || || | | |||||||| ||||||| | ||||| ||| |||||||||||| |
|
|
| T |
5268556 |
ccaccgagacccactatgctgattattggtacatggttgcccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
5268655 |
T |
|
| Q |
217 |
atatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaag |
300 |
Q |
| |
|
||||||| || |||||||| | || ||||| || ||| || | | | ||||||||||| ||| |||||| | |||||||||| |
|
|
| T |
5268656 |
atatgctggattcatccaccaaagatgtagttggcaatctatctaagggtttccaactaactccaccttcactactagcacaag |
5268739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 5281084 - 5281208
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||||||||||||| || || | | ||| || |||||||||| |||||||||||| ||||||||| |
|
|
| T |
5281084 |
atcaaaaaattctgaaacatagacccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagcaagggtggtcttacccatc |
5281183 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgatta |
141 |
Q |
| |
|
|| || |||| |||||| |||||| |
|
|
| T |
5281184 |
ccaccagaacccactatggtgatta |
5281208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 6590957 - 6590856
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| |||||| |||||||| ||| ||||| |||||| |||||||| || ||||||||| |
|
|
| T |
6590957 |
atcaaaagattttgaaacatagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacccatc |
6590858 |
T |
|
| Q |
117 |
cc |
118 |
Q |
| |
|
|| |
|
|
| T |
6590857 |
cc |
6590856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 6721692 - 6721549
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| | |||||| |||| ||| ||||||||| ||||||| |||||||| || ||||| ||| |
|
|
| T |
6721692 |
atcaaaagattctgaaagatagacccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacctatc |
6721593 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattggaacctggttgccact |
160 |
Q |
| |
|
|| | ||| ||||| |||||||| || ||||||||| |||| |
|
|
| T |
6721592 |
ccaatcagacccactatactgattatgggcacctggttgtcact |
6721549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 13270215 - 13270116
Alignment:
| Q |
19 |
caaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccc |
118 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||| ||||||| |||| | | ||||||||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
13270215 |
caaaagattctggaacatagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccc |
13270116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 7750427 - 7750501
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaag |
91 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||| ||| ||||| ||||| |
|
|
| T |
7750427 |
atcaaaagattctgaaacatagacccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaag |
7750501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 6882935 - 6883033
Alignment:
| Q |
20 |
aaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccc |
118 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||| | ||| ||| ||||||||| ||||||| || || || || ||||||||||| |
|
|
| T |
6882935 |
aaaagattctggaacattcacccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtcttacccatccc |
6883033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 6900516 - 6900617
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||| ||||||||||||| ||| ||| ||||| ||| ||||||| || ||||| || ||||||||| |
|
|
| T |
6900516 |
atcaaaagattccgaaacatggacccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacccatc |
6900615 |
T |
|
| Q |
117 |
cc |
118 |
Q |
| |
|
|| |
|
|
| T |
6900616 |
cc |
6900617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 6266122 - 6266204
Alignment:
| Q |
20 |
aaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaaggg |
102 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||| |||||| ||||||| |||| | | ||||||||| ||||||| ||||||| |
|
|
| T |
6266122 |
aaaagtttctgaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaaggg |
6266204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 6838469 - 6838408
Alignment:
| Q |
78 |
tcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactatgctgat |
139 |
Q |
| |
|
|||||||| ||||||| |||||||||||| || |||||||| || ||||| ||||||||||| |
|
|
| T |
6838469 |
tcattgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgat |
6838408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 6917526 - 6917627
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||| | ||||||| | ||||| | |||||||| ||||| | |||||||| || ||||| ||| |
|
|
| T |
6917526 |
atcaaaagattctgaatcatggacccaagctttaagttccacatgctccatcatcttatgatcattgtaaacaagttgcgcaagggtcgtattacctatc |
6917625 |
T |
|
| Q |
117 |
cc |
118 |
Q |
| |
|
|| |
|
|
| T |
6917626 |
cc |
6917627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 6259595 - 6259683
Alignment:
| Q |
30 |
gaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccc |
118 |
Q |
| |
|
||||||| |||||| ||||||| |||||| ||||||| |||| | | ||||||||| ||||||| ||||||| || ||||||||||| |
|
|
| T |
6259595 |
gaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccc |
6259683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 6142711 - 6142812
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||||||| || ||||| |||||| || ||||||||||| ||||||| |||| ||| ||||||||| | || || |||||||| || ||||| ||| |
|
|
| T |
6142711 |
atcaaaagatcttggaacatggacccaagcattaagttcaaattgctcctgtatcctgtggtcattgtaaataaactgcgcaagggttgtcttacctatc |
6142810 |
T |
|
| Q |
117 |
cc |
118 |
Q |
| |
|
|| |
|
|
| T |
6142811 |
cc |
6142812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 7112 - 6813
Alignment:
| Q |
11 |
aaaaatatcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggtttta |
110 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7112 |
aaaaacatcgaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttc |
7013 |
T |
|
| Q |
111 |
cccatccctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattagtttttccttatcaacatctc |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
7012 |
cccatccctcctaaacccactatgctgattattggaacctggttgccactgtcattgccttcaagtaaaaacttgattattttttccttatcaacatccc |
6913 |
T |
|
| Q |
211 |
taccatatatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattcctagcacaaggaccttctcc |
310 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
6912 |
taccatatatgcttgactcatccacgagagctgtagatgacaacctttttgaaggtttccaactgactaagccttcattactagcactaggaccttctcc |
6813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 6572927 - 6572800
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
116 |
Q |
| |
|
|||||| |||| ||| |||| |||||| |||||||| ||||| || | || ||| | | ||||||||| ||||||| |||||||||||| || |||||| |
|
|
| T |
6572927 |
atcaaatgattttgagacatggacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatc |
6572828 |
T |
|
| Q |
117 |
cctcctaaaccgactatgctgattattg |
144 |
Q |
| |
|
|| || ||||| |||||||||||||||| |
|
|
| T |
6572827 |
ccacccaaacccactatgctgattattg |
6572800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 35140017 - 35139943
Alignment:
| Q |
17 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaag |
91 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||| |||||| ||||| | |||| | | ||||||||| ||||| |
|
|
| T |
35140017 |
atcaaaagattcagaaacatggacccaagctttaaattcaaactgctcatgtatcctatggtcattgtaaacaag |
35139943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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