View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7921_low_8 (Length: 310)

Name: NF7921_low_8
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7921_low_8
NF7921_low_8
[»] chr2 (3 HSPs)
chr2 (1-284)||(41332538-41332820)
chr2 (161-205)||(40439079-40439123)
chr2 (162-204)||(12486065-12486107)
[»] chr8 (1 HSPs)
chr8 (121-203)||(9812453-9812536)
[»] scaffold0767 (1 HSPs)
scaffold0767 (166-204)||(3756-3794)
[»] chr6 (2 HSPs)
chr6 (162-204)||(5483894-5483936)
chr6 (162-204)||(13417488-13417530)
[»] chr4 (4 HSPs)
chr4 (162-204)||(36866886-36866928)
chr4 (167-204)||(42169121-42169158)
chr4 (161-202)||(45096609-45096650)
chr4 (166-206)||(17284812-17284852)
[»] chr1 (4 HSPs)
chr1 (153-195)||(48377832-48377874)
chr1 (164-208)||(10506289-10506333)
chr1 (156-202)||(44744747-44744793)
chr1 (161-201)||(46741679-46741719)
[»] chr7 (1 HSPs)
chr7 (172-207)||(48445990-48446025)
[»] chr5 (1 HSPs)
chr5 (166-208)||(5002217-5002259)
[»] chr3 (1 HSPs)
chr3 (166-202)||(653272-653308)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 41332538 - 41332820
Alignment:
Q  1 ttcaatggtgacacatgttatgtcttgtgttcaatatttatctataagggtaaaaatggtaactatagacatgaacattagcacatactccatccggtct 100  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41332538 ttcaatggtgacacatgttatgttttgtgttcaatatatatctataagggtaaaaatggtaactatagacatgaacattagcacatactccatctggtct 41332637  T
Q  101 caattgtaagcgnnnnnnnnttattttttaagttcattaaataattaataaattgatttgtaatatagacaaaatacatcaattattcaataaatgtaaa 200  Q
    ||||||||||||        |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41332638 caattgtaagcgaaaaaaa-ttattttttaagttcattgaataattaatgaattggtttgtaatatagacaaaatacatcaattattcaataaatgtaaa 41332736  T
Q  201 aagtaaaagattaattattattgagatcggggagagtaaatattacatcaaattaatcacactggcattcacatcatttgaata 284  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41332737 aagtaaaagattacttattattgagatcggggagagtaaatattacatcaaattaatcacactgacattcacatcatttgaata 41332820  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 40439123 - 40439079
Alignment:
Q  161 taatatagacaaaatacatcaattattcaataaatgtaaaaagta 205  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||    
T  40439123 taatatagataaaatacatcaattattcaatgaatttaaaaagta 40439079  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 12486065 - 12486107
Alignment:
Q  162 aatatagacaaaatacatcaattattcaataaatgtaaaaagt 204  Q
    ||||||||| |||||||||||||||||||| ||| ||||||||    
T  12486065 aatatagaccaaatacatcaattattcaatgaatctaaaaagt 12486107  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 9812453 - 9812536
Alignment:
Q  121 ttattttttaagttcattaaataattaataaat-tgatttgtaatatagacaaaatacatcaattattcaataaatgtaaaaag 203  Q
    |||||||||||||||||| ||||| ||||| || | |||| |||||| ||| | |||||||| ||||||||||||| |||||||    
T  9812453 ttattttttaagttcattcaataaataatatatctaatttttaatattgactatatacatcatttattcaataaatttaaaaag 9812536  T

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Target: scaffold0767 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 3794 - 3756
Alignment:
Q  166 tagacaaaatacatcaattattcaataaatgtaaaaagt 204  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  3794 tagacaaaatacatcaattactcaataaatgtaaaaagt 3756  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 5483936 - 5483894
Alignment:
Q  162 aatatagacaaaatacatcaattattcaataaatgtaaaaagt 204  Q
    |||||||||||||||||||||||||| ||||||| ||||||||    
T  5483936 aatatagacaaaatacatcaattatttaataaatttaaaaagt 5483894  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 13417488 - 13417530
Alignment:
Q  162 aatatagacaaaatacatcaattattcaataaatgtaaaaagt 204  Q
    |||||| || |||||||||||||||||||||||| ||||||||    
T  13417488 aatataaactaaatacatcaattattcaataaatctaaaaagt 13417530  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 36866928 - 36866886
Alignment:
Q  162 aatatagacaaaatacatcaattattcaataaatgtaaaaagt 204  Q
    |||||||||||||||||||||||||||||||||| || |||||    
T  36866928 aatatagacaaaatacatcaattattcaataaatctataaagt 36866886  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 42169121 - 42169158
Alignment:
Q  167 agacaaaatacatcaattattcaataaatgtaaaaagt 204  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  42169121 agacaaaatacatcaattattcaataaatctaaaaagt 42169158  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 45096650 - 45096609
Alignment:
Q  161 taatatagacaaaatacatcaattattcaataaatgtaaaaa 202  Q
    |||| ||||||| |||||||||||||||||||||| ||||||    
T  45096650 taatctagacaagatacatcaattattcaataaatctaaaaa 45096609  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 17284812 - 17284852
Alignment:
Q  166 tagacaaaatacatcaattattcaataaatgtaaaaagtaa 206  Q
    ||||||| ||||||||||||| |||||||| ||||||||||    
T  17284812 tagacaagatacatcaattatacaataaatttaaaaagtaa 17284852  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 48377874 - 48377832
Alignment:
Q  153 ttgatttgtaatatagacaaaatacatcaattattcaataaat 195  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  48377874 ttgatttataatatagactaaatacatcaattattcaataaat 48377832  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 10506289 - 10506333
Alignment:
Q  164 tatagacaaaatacatcaattattcaataaatgtaaaaagtaaaa 208  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||    
T  10506289 tatagacaaaatacatcaactattcaatgaatctaaaaagtaaaa 10506333  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 44744793 - 44744747
Alignment:
Q  156 atttgtaatatagacaaaatacatcaattattcaataaatgtaaaaa 202  Q
    ||||||||||||||| ||||| |||||||||| ||||||| ||||||    
T  44744793 atttgtaatatagaccaaatatatcaattatttaataaatataaaaa 44744747  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 46741719 - 46741679
Alignment:
Q  161 taatatagacaaaatacatcaattattcaataaatgtaaaa 201  Q
    |||||||||| ||||||||||| |||||||||||| |||||    
T  46741719 taatatagaccaaatacatcaactattcaataaatttaaaa 46741679  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 48446025 - 48445990
Alignment:
Q  172 aaatacatcaattattcaataaatgtaaaaagtaaa 207  Q
    |||||||||||||||||||||||| |||||||||||    
T  48446025 aaatacatcaattattcaataaatctaaaaagtaaa 48445990  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 5002217 - 5002259
Alignment:
Q  166 tagacaaaatacatcaattattcaataaatgtaaaaagtaaaa 208  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||    
T  5002217 tagacaagatacatcaattactcaataaatctaaaaagtaaaa 5002259  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 653308 - 653272
Alignment:
Q  166 tagacaaaatacatcaattattcaataaatgtaaaaa 202  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  653308 tagaccaaatacatcaattattcaataaatttaaaaa 653272  T

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