View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_low_9 (Length: 277)
Name: NF7921_low_9
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 9313239 - 9313482
Alignment:
| Q |
23 |
tagtccaattttcgttacttataaacagcaaagcacaacgttgaaactgcacttgctttgcagtgcttaaaaggttctttttcctctctttgctgcatcc |
122 |
Q |
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| T |
9313239 |
tagtccaattttcgttacttataaacagcaaagcacaacgttgaaactgcacttgctttgcagtgcttaaaaggtttgttttcctctctttgttgcatcc |
9313338 |
T |
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| Q |
123 |
attcattaaatcaacaatgtattgcatgaatcaatgtatatatggtagtgactcgaagcttgtgtaattttctatgtgtgaatccttgcactcattcaag |
222 |
Q |
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| T |
9313339 |
attcattaaatcaacaatgtattgcatgaatcaatgtatatatggtagtgactcgaagcttgtgtaattttctctgtgtgaatccttgcactcattcaag |
9313438 |
T |
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| Q |
223 |
cattaaccgtggcgtttaaccattcacttcatccatccattcat |
266 |
Q |
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| T |
9313439 |
cattaaccgtggcgtttaaccattcacttcatccatccattcat |
9313482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 9288681 - 9288916
Alignment:
| Q |
24 |
agtccaattttcgttacttataaacagcaaagcacaacgttgaaactgcacttgctttgcagtgcttaaaaggttctttttcctctctttgctgcatcca |
123 |
Q |
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| T |
9288681 |
agtccaattttcgttacttataaacggcaaagcgcaacattgaaactgcacttgc------gtgcttaaaaggtttattttcctctctttgttgcatcca |
9288774 |
T |
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| Q |
124 |
ttcattaaatcaacaatgtattgcatgaatcaatgtatatatggtagtgactcgaagcttgtgtaattttctatgtgtgaatccttgcactcattcaagc |
223 |
Q |
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| T |
9288775 |
t-cattaaatcaacaatgtattgtatgaatcaatgtctatatggtattgacttgaagcttgtgtaattttctatgtgtgaatccttgtactcattcaagc |
9288873 |
T |
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| Q |
224 |
attaaccgtggcgtttaaccattcacttcatccatccattcat |
266 |
Q |
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| T |
9288874 |
attaaccgtggcatttaaccattctcttcatccatccattcat |
9288916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 50 - 265
Target Start/End: Complemental strand, 9064477 - 9064259
Alignment:
| Q |
50 |
gcaaagcacaacgttgaaactgcacttgctttgcagtgcttaaaaggttctttttcctctctttgctgcatccattcattaaatcaacaatgtattgcat |
149 |
Q |
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|||||||||||| || |||| |||||||| |||||||| || ||||||| ||||||||||| | ||||||||||| |||||||||||||||||| ||| |
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| T |
9064477 |
gcaaagcacaactttaaaaccgcacttgcgttgcagtgtttgaaaggtttgttttcctctctgt--tgcatccattctttaaatcaacaatgtattacat |
9064380 |
T |
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| Q |
150 |
g-----aatcaatgtatatatggtagtgactcgaagcttgtgtaattttctatgtgtgaatccttgcactcattcaagcattaaccgtggcgtttaacca |
244 |
Q |
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|||| |||||||||||||| ||||| ||| ||||||| ||| || ||||||||||||||||||||||||||||||| | |||| |||||||| |
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| T |
9064379 |
cgcacaaatcgatgtatatatggtattgacttgaactttgtgtacgtttatacgtgtgaatccttgcactcattcaagcattaatcatggcatttaacca |
9064280 |
T |
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| Q |
245 |
ttcacttcatccatccattca |
265 |
Q |
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||| |||||| |||||||||| |
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| T |
9064279 |
ttctcttcattcatccattca |
9064259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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