View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7922_high_12 (Length: 204)
Name: NF7922_high_12
Description: NF7922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7922_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 38728783 - 38728952
Alignment:
| Q |
19 |
gcatccaccttcattctcatccatgaaaaaggccaataaagggacataaacttgatcaagctccttggcttgccatgtctaaggtttccaatattctttt |
118 |
Q |
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| T |
38728783 |
gcatccaccttcattctcatccatgaaaaaggccaataaagggacataaacttgatcaagctccttggcttgccatgtctaaggcttccaatattctttt |
38728882 |
T |
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| Q |
119 |
tagtagcaacatgccatttccattccctataagcaacagaaccaataactctaccccatttctgtttcat |
188 |
Q |
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| T |
38728883 |
tagtagcaacatgccatttccattccctataagcaacagaaccaataactctaccccatttctgtttcat |
38728952 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 12403891 - 12403833
Alignment:
| Q |
123 |
agcaacatgccatttccattccctataagcaacagaaccaataactctaccccatttct |
181 |
Q |
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| T |
12403891 |
agcaacatgccatttccattccctataagcagcttgaccaataactccaccccatttct |
12403833 |
T |
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