View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7922_high_3 (Length: 655)
Name: NF7922_high_3
Description: NF7922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7922_high_3 |
 | |
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| [»] scaffold0057 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 226 - 639
Target Start/End: Complemental strand, 10050731 - 10050318
Alignment:
| Q |
226 |
gcccttacctttgagtgattctccttcgacacaagacgtcctaggattgattccgaactgaacgcacaagcaagcctttaaggctcctaaaaccttctaa |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
10050731 |
gcccttacctttgagtgattctccttcgacacaagacgtactaggattgattccgaaccgaacgcacaagcaagtctttaaggctcctaagaccttctaa |
10050632 |
T |
|
| Q |
326 |
agagtatagtggaccgagacttagaattttggtgagatgatgttgatggcaatgatgattggcgtaagcttccaaagctaaggatatttagaaggctagc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10050631 |
agagtatagtggaccgagacttagaattttggtgagatgatgttgatggcaatgatgatgggcgtaagcttccaaagctaaggatatttagaaggctagc |
10050532 |
T |
|
| Q |
426 |
tatgcgaggtttcgtttcatgattacttacacatgccctattgaaattgaccaagagattttaaatatatgataaggtgttttagaataattgaaaacgt |
525 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10050531 |
tatgcgaggtttcgttttctgatttcttacacatgccctcttggaattgaccaagggattttaaatatatgataaggtgttgtagaataattgaaaacgt |
10050432 |
T |
|
| Q |
526 |
atgacatatattaagggtaataatttggagttatgaggaaatcaaaatggaaaatattatagtattatggttgactttatctaaatcaagaagacaatca |
625 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10050431 |
aagacatatattaagggtaataatttggagttatgaggaaatcaaaatgaagaatattatagtattatggttgactttatctaaatcaagaagacaatca |
10050332 |
T |
|
| Q |
626 |
atggcttctatttg |
639 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10050331 |
atggcttctatttg |
10050318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 35409570 - 35409776
Alignment:
| Q |
32 |
tcaaaactaacacaatattccatttcacaatcaatgacacacataaatcacagaacctttcaatcatagtcaatcacacacatacatcaaagcacaactc |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35409570 |
tcaaaactaacacattattccatttcacaatcaatcacacacataaatcacataacctcttaatcatagtcaatcacacacatacatcaaagaacaactc |
35409669 |
T |
|
| Q |
132 |
aaacacaatgcataactttacctttttaatggttaaatattataatatttatttcataacataaacttattcctagcacgaacgtatggg--aaaagccc |
229 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
35409670 |
aaacacaatgcataacattatctttttaatggttaaatattctaatatttgtttcataacataaacttattcctagcacgaatgtatggggaaaaagccc |
35409769 |
T |
|
| Q |
230 |
ttacctt |
236 |
Q |
| |
|
||||||| |
|
|
| T |
35409770 |
ttacctt |
35409776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 226 - 639
Target Start/End: Original strand, 76511 - 76925
Alignment:
| Q |
226 |
gcccttacctttgagtgattctccttcgacacaagacgtcctaggattgattccgaactgaacgcacaagcaagcctttaaggctcctaaaaccttctaa |
325 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
76511 |
gcccttacctttaagtgattctccttcgacacaagacgtcctaggattgattccgaacggaacacacaagcaagtctttaaggctcctaagaccttctaa |
76610 |
T |
|
| Q |
326 |
agagtatagtggaccgagacttagaattttggtgagatgatgttgatggcaatgatgattggcgtaagcttccaaagctaaggatatttagaaggctagc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
76611 |
agagtatagtggaccgagacttagaattttggtgagatgatgttgatggcaatgatgatgggcgtaagcttccaaagctaaggatatttagaaggctagc |
76710 |
T |
|
| Q |
426 |
tatgcgaggtttcgtttcatgattacttacacatgccctattgaaattgaccaagagattttaaatatatgataaggtgttttagaataattgaaaacgt |
525 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
76711 |
tatgagaggtttcgttttctgatttcttacacatgccctattggaattgaccaagggattttaaatatatgatagggtgttgtagaataattgaaaacgt |
76810 |
T |
|
| Q |
526 |
atgacatatattaagggt-aataatttggagttatgaggaaatcaaaatggaaaatattatagtattatggttgactttatctaaatcaagaagacaatc |
624 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
76811 |
atgacatatattaagggtgaataatttggagttatgaggaaatcaaaatggagaatattatagtattatggttgacttcatctaaatcaagaagacattc |
76910 |
T |
|
| Q |
625 |
aatggcttctatttg |
639 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
76911 |
aatggcttctatttg |
76925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 36903174 - 36902969
Alignment:
| Q |
32 |
tcaaaactaacacaatattccatttcacaatcaatgacacacataaatcacagaacctttcaatcatagtcaatcacacacatacatcaaagcacaactc |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36903174 |
tcaaaactaacacactattccatttcacaatcaatcacacccataaatcacagaaactctcaatcatagtcaatcacacacatacatcaaagaacaactc |
36903075 |
T |
|
| Q |
132 |
aaacacaatgcataactttacctttttaatggttaaatattataatatttatttcataacataaacttattcctagcacgaacgtatggg--aaaagccc |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
36903074 |
aaacacaatgcataacattacctttttaatggttaaatattctaatatttatttcataacataaacttattcctaacacgaacgtatggggaaaaagccc |
36902975 |
T |
|
| Q |
230 |
ttacct |
235 |
Q |
| |
|
|||||| |
|
|
| T |
36902974 |
ttacct |
36902969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 21221840 - 21221937
Alignment:
| Q |
40 |
aacacaatattccatttcacaatcaatgacacacataaatcacagaacctttcaatcatagtcaatcacacacatacatcaaagcacaactcaaacaca |
138 |
Q |
| |
|
|||| |||| || |||||||||| ||||| || |||||| || ||||| | | || |||||||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
21221840 |
aacataatactcaatttcacaattaatgaaacgcataaaacatagaacatcttaa-catagtcaatcacacacatagatcaaagaacatctcaaacaca |
21221937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 21222792 - 21222855
Alignment:
| Q |
177 |
tatttatttcataacataaacttattcctagcacgaacgtat-gggaaaagcccttacctttga |
239 |
Q |
| |
|
||||| |||||||| ||||||||||||| | ||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
21222792 |
tatttttttcataatataaacttattccaatcacgaacgtatggggaaaaacccttgcctttga |
21222855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 31875168 - 31874963
Alignment:
| Q |
32 |
tcaaaactaacacaatattccatttcacaatcaatgacacacataaatcacagaacctttcaatcatagtcaatcacacacatacatcaaagcacaactc |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31875168 |
tcaaaactaacacactattccatttcacagtcaatcacacacataaatcacagaacctctcaatcatagtcaatcacacacatacatcaaagaacaactc |
31875069 |
T |
|
| Q |
132 |
aaacacaatgcataactttacctttttaatggttaaatattataatatttatttcataacataaacttattcctagcacgaacgtatggg--aaaagccc |
229 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
31875068 |
aaacacaaaacataacattacctttttaatggttaaatattctaatatttatttcataacataaacttattcctagcacgaacatatggggaaaaagccc |
31874969 |
T |
|
| Q |
230 |
ttacct |
235 |
Q |
| |
|
|||||| |
|
|
| T |
31874968 |
ttacct |
31874963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 22625059 - 22625004
Alignment:
| Q |
226 |
gcccttacctttgagtgattctccttcgacacaagacgt-cctaggattgattccg |
280 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
22625059 |
gcccttacctttgagtgactttccgtcgacacaagacgtccctaggattgattccg |
22625004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 47 - 236
Target Start/End: Original strand, 78848 - 79039
Alignment:
| Q |
47 |
tattccatttcacaatcaatgacacacataaatcacagaacctttcaatcatagtcaatcacacacatacatcaaagcacaactcaaacacaatgcataa |
146 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
78848 |
tattccatttcacaatcaatcaaacacataaatcacagaacctctcaatcatagtcaatcacacacatacatcaaagaacaactccaacacaatgcataa |
78947 |
T |
|
| Q |
147 |
ctttacctttttaatggttaaatattataatatttatttcataacataaacttattcctagcacgaacgtatggg--aaaagcccttacctt |
236 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
78948 |
cattacctttttaatggttaaatattctaatatttatttcataacataaacttattcctagcacgaacgtatgggaaaaaagcccttacctt |
79039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 200613 - 200692
Alignment:
| Q |
159 |
aatggttaaatattataatatttatttcataacataaacttattcctagcacgaacgtatggg--aaaagcccttacctt |
236 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
200613 |
aatggttaaatatttcattatttccttcataacataaatttattcctagcacgaacgtatggggaaaaaacccttacctt |
200692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 200506 - 200552
Alignment:
| Q |
26 |
atatcttcaaaactaacacaatattccatttcacaatcaatgacaca |
72 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
200506 |
atattttcaaaactaacacactattccatttcacaatcaatcacaca |
200552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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