View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7922_low_1 (Length: 843)
Name: NF7922_low_1
Description: NF7922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7922_low_1 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 755; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 16 - 823
Target Start/End: Original strand, 175719 - 176524
Alignment:
| Q |
16 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaa-ccatcgatgacagattcg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
175719 |
atgaagctcaactttcctctaaatccttctaacattcgtgctatcatagctgactcttgcgatggcatcatctgtcttcaaaccatcgatgacagattcg |
175818 |
T |
|
| Q |
115 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatattgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
175819 |
actgtggtgatccgctactatggaacccttgtaccaccaaattcaatatattgccctctttggatttcgagaaaagtctacaaattgcatacaccattgg |
175918 |
T |
|
| Q |
215 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaatatttcaaaatgaaatttacaaaactcaagttaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
175919 |
gtatgacgctcaatttacccatacttacaaggtagttgctgtttctagctatatatctcgtggaat---tcaaaatgatgtttacaaaactcaagttaag |
176015 |
T |
|
| Q |
315 |
gctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggca |
414 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
176016 |
gttcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatttgtaagtggca |
176115 |
T |
|
| Q |
415 |
gcgttcattgggccattgaagatcaaaataaccgattcctaaaatcacaagatccagatgaccactcttcatggtcatggcacattctttctcttcattt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
176116 |
gcgttcattgggccattgaagatcaaaataaccgattcctaaaatcacaagatccagatgaccactcttcatggtcatggcacattctttctcttcattt |
176215 |
T |
|
| Q |
515 |
aggaaatgagtcgtatcgggagatttcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgct |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
176216 |
aggaaatgagtcgtatcgggagatttcccagcccgattatggtctacctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgct |
176315 |
T |
|
| Q |
615 |
cacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactcttccattcgccgaattcgttggtc |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
176316 |
cacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattcttggactaaattgttcactcttccatttgccgaattcgttggtc |
176415 |
T |
|
| Q |
715 |
ttgatggcgtctgcattactcggctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactgg |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
176416 |
ttgatggcgtctgcattactcggctttatatttctgaggaggaccaccaagtgttcgtgtacttcatcaataaggtatatgtttacaattacaagactgg |
176515 |
T |
|
| Q |
815 |
tgcagtaaa |
823 |
Q |
| |
|
||||||||| |
|
|
| T |
176516 |
tgcagtaaa |
176524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 497 - 681
Target Start/End: Complemental strand, 1471116 - 1470926
Alignment:
| Q |
497 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
590 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||| ||||||| ||||| ||||||| | || ||||||| |||||| ||||||||||||||| |
|
|
| T |
1471116 |
cattctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttct |
1471017 |
T |
|
| Q |
591 |
agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat |
681 |
Q |
| |
|
||||||| | ||||| |||||||||| ||| || ||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1471016 |
agggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaat |
1470926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 497 - 681
Target Start/End: Complemental strand, 1459734 - 1459544
Alignment:
| Q |
497 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
590 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||| ||||||| ||||| |||||||| || |||||||||||||| ||||||||||||| | |
|
|
| T |
1459734 |
cattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttat |
1459635 |
T |
|
| Q |
591 |
agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat |
681 |
Q |
| |
|
||||||| | |||||||||||||||| || || ||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
1459634 |
agggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaatcttggactaaat |
1459544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 497 - 698
Target Start/End: Complemental strand, 7564944 - 7564737
Alignment:
| Q |
497 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtct------acctctgcataacttcagcttgggggtttct |
590 |
Q |
| |
|
||||||||| ||| ||||||| || ||||| |||| ||||||| ||||| ||||||||| | || ||||| | |||| ||||| ||||||| | |
|
|
| T |
7564944 |
cattctttcccttgatttaggtaacgagtcttatcaagagattttgcagccagattatggtgttcaccaacgtctgcgttactttagcttaggggtttgt |
7564845 |
T |
|
| Q |
591 |
agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactc |
690 |
Q |
| |
|
||||||||| |||| |||||||||||||| |||||||||| |||||||| |||||| ||||||||||| || |||||||||||||||| ||||| | |
|
|
| T |
7564844 |
agggattgcttatgggtccttgctcacactacaacttttttgaatatttgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtg |
7564745 |
T |
|
| Q |
691 |
ttccattc |
698 |
Q |
| |
|
|||||||| |
|
|
| T |
7564744 |
ttccattc |
7564737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 497 - 687
Target Start/End: Complemental strand, 370978 - 370782
Alignment:
| Q |
497 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
590 |
Q |
| |
|
||||||||||||| |||||| ||| |||| |||| |||||||| ||||| |||||||||||| ||||||| | | ||| ||||| ||||||| |
|
|
| T |
370978 |
cattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttct |
370879 |
T |
|
| Q |
591 |
agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttca |
687 |
Q |
| |
|
||||||||| ||||| |||||||||| || |||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
370878 |
agggattgcttatgcatccttgctcagactaaaacttttatgggcgtttgggttatgaagaattatggaaataaagattcttggactaaattgttca |
370782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 569 - 696
Target Start/End: Complemental strand, 1442223 - 1442096
Alignment:
| Q |
569 |
taacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagat |
668 |
Q |
| |
|
|||||| |||||||||||||| | |||||| ||||| |||||||||| | || |||| ||||||||| ||| |||||| |||||||||| ||||||| |
|
|
| T |
1442223 |
taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagat |
1442124 |
T |
|
| Q |
669 |
tcttggactaaatcgttcactcttccat |
696 |
Q |
| |
|
||||||||||||| ||||||| |||||| |
|
|
| T |
1442123 |
tcttggactaaattgttcactgttccat |
1442096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 299 - 445
Target Start/End: Complemental strand, 7565106 - 7564960
Alignment:
| Q |
299 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggc |
398 |
Q |
| |
|
||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||||||| || || |||| |||| ||||| |||||| |
|
|
| T |
7565106 |
caaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctgaaggacgtgttggg |
7565007 |
T |
|
| Q |
399 |
aaatttgtaagtggcagcgttcattgggccattgaagatcaaaataa |
445 |
Q |
| |
|
||||||||||||||| | ||||||||| ||| |||||||| |||| |
|
|
| T |
7565006 |
aaatttgtaagtggcgccattcattgggtcataaaagatcaagataa |
7564960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 389
Target Start/End: Complemental strand, 1471278 - 1471188
Alignment:
| Q |
299 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaaggg |
389 |
Q |
| |
|
|||||||| |||||||| ||| |||||||| | ||| | |||||||| ||||| |||||||||||| || ||||||||| |||||||||| |
|
|
| T |
1471278 |
caaaactctagttaaggttcatactttaggtaacaatttttggagaacgattcaagacttcccttctcagctcatgggtcaacccgaaggg |
1471188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 561 - 686
Target Start/End: Complemental strand, 1453963 - 1453838
Alignment:
| Q |
561 |
cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa |
660 |
Q |
| |
|
||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| | | | ||||||||| ||| |||||| ||||||||| |
|
|
| T |
1453963 |
cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa |
1453864 |
T |
|
| Q |
661 |
ataaagattcttggactaaatcgttc |
686 |
Q |
| |
|
||||||| ||||||| ||||| |||| |
|
|
| T |
1453863 |
ataaagactcttggaataaattgttc |
1453838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 561 - 686
Target Start/End: Complemental strand, 1465655 - 1465530
Alignment:
| Q |
561 |
cctctgcataacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaa |
660 |
Q |
| |
|
||||||||| |||| |||||||| || |||||||||||| ||||| ||||||||||| | | | ||||||||| ||| |||||| ||||||||| |
|
|
| T |
1465655 |
cctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctcacgctaatgactctttggatatctgggttatgaagtattatggaa |
1465556 |
T |
|
| Q |
661 |
ataaagattcttggactaaatcgttc |
686 |
Q |
| |
|
||||||| ||||||| ||||| |||| |
|
|
| T |
1465555 |
ataaagactcttggaataaattgttc |
1465530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 810
Target Start/End: Complemental strand, 1453787 - 1453714
Alignment:
| Q |
737 |
gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaaga |
810 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | ||||| || || |||||||||||||||||||||||| |
|
|
| T |
1453787 |
gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaaga |
1453714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 810
Target Start/End: Complemental strand, 1459476 - 1459403
Alignment:
| Q |
737 |
gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaaga |
810 |
Q |
| |
|
|||||||||||||||||| || |||||||| || | || ||| | |||||| ||||||||||||||||||||| |
|
|
| T |
1459476 |
gctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaaga |
1459403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 810
Target Start/End: Complemental strand, 1465479 - 1465406
Alignment:
| Q |
737 |
gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaaga |
810 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| | ||||| || || |||||||||||||||||||||||| |
|
|
| T |
1465479 |
gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaaga |
1465406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 681
Target Start/End: Complemental strand, 9819881 - 9819832
Alignment:
| Q |
632 |
ggatatttggcgtatgaacgattatggaaataaagattcttggactaaat |
681 |
Q |
| |
|
||||||||||| |||||| || |||||||||| ||| ||||||||||||| |
|
|
| T |
9819881 |
ggatatttggcttatgaaggaatatggaaatagagactcttggactaaat |
9819832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 497 - 686
Target Start/End: Original strand, 3926917 - 3927112
Alignment:
| Q |
497 |
cattctttctcttcatttaggaaatgagtcgtatcgggagatttcccagcccgattatggtcta------cctctgcataacttcagcttgggggtttct |
590 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||| |||||||| | |||||||| |||||| || | |||| ||||| ||| ||||||||| |
|
|
| T |
3926917 |
cattctttctcttgatttaggaaacgagtcctatcaagagatttcacggcccgattttggtcttgatgatccggttcatatcttcaccttaggggtttct |
3927016 |
T |
|
| Q |
591 |
agggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc |
686 |
Q |
| |
|
| ||||||| | || ||||||| | |||| |||||||| |||| ||||||| |||||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
3927017 |
aaggattgcttgtgtgtccttgtttacactgaaactttgttgggtatttgggttatgaaggattatggaaataaaaattcttggactaaattgttc |
3927112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 304 - 442
Target Start/End: Original strand, 3926760 - 3926898
Alignment:
| Q |
304 |
ctcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggcaaatt |
403 |
Q |
| |
|
||||||||| || ||| ||| |||| ||||| | |||||| ||||||||| |||||||||| | |||||||| ||||| | ||| ||||||| ||||| |
|
|
| T |
3926760 |
ctcaagttagggttcatactctaggtaccaatttttggaggaggattccaaacttcccttcaaatatcatgggtttacccaatgggtatgttgggaaatt |
3926859 |
T |
|
| Q |
404 |
tgtaagtggcagcgttcattgggccattgaagatcaaaa |
442 |
Q |
| |
|
||||||||||| || |||||||||| ||| ||||||| |
|
|
| T |
3926860 |
tgtaagtggcacaattaattgggccatagaaaatcaaaa |
3926898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 1421520 - 1421453
Alignment:
| Q |
296 |
ttacaaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
364 |
Q |
| |
|
|||||||||||||||| | | ||| ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1421520 |
ttacaaaactcaagttgaagttcatacttt-ggcaccaactcttggagaaggattaaggacttcccttc |
1421453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 593 - 694
Target Start/End: Original strand, 55419742 - 55419843
Alignment:
| Q |
593 |
ggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactctt |
692 |
Q |
| |
|
||||||| |||||||| ||||||||||| | ||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| ||| ||| || |
|
|
| T |
55419742 |
ggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaattgtttactatt |
55419841 |
T |
|
| Q |
693 |
cc |
694 |
Q |
| |
|
|| |
|
|
| T |
55419842 |
cc |
55419843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 299 - 440
Target Start/End: Original strand, 55419478 - 55419619
Alignment:
| Q |
299 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttcgcaactcatgggtatacccgaagggaatgttggc |
398 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||||| ||||| |||||| |||||||||||||| || ||| |||| | ||||||| | | || |
|
|
| T |
55419478 |
caaaactcaagttagggctcatactttaggtaccaacttttggaaaaggataccagacttcccttctgaaatcacgggtttgcccgaagagtgtccgggg |
55419577 |
T |
|
| Q |
399 |
aaatttgtaagtggcagcgttcattgggccattgaagatcaa |
440 |
Q |
| |
|
|||||||||||||||| | || |||||||||| ||||||||| |
|
|
| T |
55419578 |
aaatttgtaagtggcaccattaattgggccatagaagatcaa |
55419619 |
T |
|
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Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 40724 - 40659
Alignment:
| Q |
299 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
364 |
Q |
| |
|
||||||||||||||| | ||| ||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40724 |
caaaactcaagttaaagttcatactttgggcaccaactcttggagaaggattgaagacttcccttc |
40659 |
T |
|
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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 644 - 692
Target Start/End: Original strand, 2442050 - 2442098
Alignment:
| Q |
644 |
tatgaacgattatggaaataaagattcttggactaaatcgttcactctt |
692 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2442050 |
tatgaaggagtatggaaataaagattcttggactaaattgttcactctt |
2442098 |
T |
|
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 694
Target Start/End: Complemental strand, 4142181 - 4142124
Alignment:
| Q |
637 |
tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcactcttcc |
694 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
4142181 |
tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc |
4142124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 637 - 689
Target Start/End: Complemental strand, 4157991 - 4157939
Alignment:
| Q |
637 |
tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttcact |
689 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
4157991 |
tttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact |
4157939 |
T |
|
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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 687
Target Start/End: Original strand, 6538845 - 6538888
Alignment:
| Q |
644 |
tatgaacgattatggaaataaagattcttggactaaatcgttca |
687 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
6538845 |
tatgaaggagtatggaaataaagattcttggactaaattgttca |
6538888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 686
Target Start/End: Complemental strand, 7160801 - 7160752
Alignment:
| Q |
637 |
tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc |
686 |
Q |
| |
|
|||||| |||||| || ||||||||||| |||||||||||||||| |||| |
|
|
| T |
7160801 |
tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc |
7160752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 686
Target Start/End: Complemental strand, 7168737 - 7168688
Alignment:
| Q |
637 |
tttggcgtatgaacgattatggaaataaagattcttggactaaatcgttc |
686 |
Q |
| |
|
|||||| |||||| || ||||||||||| |||||||||||||||| |||| |
|
|
| T |
7168737 |
tttggcttatgaaggaatatggaaataacgattcttggactaaattgttc |
7168688 |
T |
|
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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 627 - 681
Target Start/End: Original strand, 89137 - 89191
Alignment:
| Q |
627 |
tttttggatatttggcgtatgaacgattatggaaataaagattcttggactaaat |
681 |
Q |
| |
|
||||| ||||||||| |||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
89137 |
ttttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaat |
89191 |
T |
|
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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 689
Target Start/End: Complemental strand, 23766902 - 23766857
Alignment:
| Q |
644 |
tatgaacgattatggaaataaagattcttggactaaatcgttcact |
689 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
23766902 |
tatgaaagaatatggaaataaagagtcttggactaaattgttcact |
23766857 |
T |
|
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 689
Target Start/End: Complemental strand, 23816750 - 23816705
Alignment:
| Q |
644 |
tatgaacgattatggaaataaagattcttggactaaatcgttcact |
689 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
23816750 |
tatgaaagaatatggaaataaagagtcttggactaaattgttcact |
23816705 |
T |
|
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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 24233753 - 24233688
Alignment:
| Q |
299 |
caaaactcaagttaaggctcacactttaggcaccaactcttggagaaggattccagacttcccttc |
364 |
Q |
| |
|
||||||||||||||| | ||| || ||||| ||| ||||||||||||||||| ||||||||||| |
|
|
| T |
24233753 |
caaaactcaagttaaagttcatacattaggtaccgactcttggagaaggattaaggacttcccttc |
24233688 |
T |
|
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