View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7922_low_2 (Length: 680)
Name: NF7922_low_2
Description: NF7922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7922_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 46091304 - 46090967
Alignment:
| Q |
18 |
catcacatacaagatattgcatcaatgaattgactctagacctcctttaataaagttttgaaatatatgcacttggatgagattccatcgtaaccatagg |
117 |
Q |
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| T |
46091304 |
catcacatacaagatattgcaacagtgaattgactctagacctcctttaataaagttttgaaatatatgcacttggatgagattccatcataaccatagg |
46091205 |
T |
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| Q |
118 |
ttctgagttcaaatattattctcgaaatgcaatagtgttaaatctcttgagtgagaattttgtcacttattgcagtcctacccgatacaagatattaatc |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
46091204 |
ttctgagttcaaatattattctcgaaatacaatagtgttaaatctcttgagtgagaattttgtcacttattgcagtcctacccgacataagatattaatc |
46091105 |
T |
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| Q |
218 |
tttgcggttgcgcgccaattcaaaagaggnnnnnnngtttttgaaatattatttccaaattgataaattttaatattaaataagatgaacctgattagaa |
317 |
Q |
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| T |
46091104 |
tttgcggttgcgcgccaattcaaaagaggaaaaaaagtttttgaaatattatttccaaattgataaattttaatattaaataagatgaacctgattagaa |
46091005 |
T |
|
| Q |
318 |
aaacttcactagctagattactggcattaattgctctc |
355 |
Q |
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| T |
46091004 |
aaacttcactagctagattactggcattaattgctctc |
46090967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 430 - 664
Target Start/End: Complemental strand, 46090893 - 46090657
Alignment:
| Q |
430 |
caataattgttcagtattgaattgagcctctaatgtgaagggtccaagcttcttaat-caattaaagtcgcatggtataagatcatgcagtgtctgcaat |
528 |
Q |
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| T |
46090893 |
caataattgttcagtattgaattgagcctctaatgtgaagggtccaagcttcttaatccaattaaagtcgcatggtataagatcatgcagtgtctgcaat |
46090794 |
T |
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| Q |
529 |
ttaagag-nnnnnnnnaaacaatattcaaatattattttaaaaatcacaagtggtccnnnnnnnntgtaattcgaatttcgtttacattaatgaaattga |
627 |
Q |
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| T |
46090793 |
ttaagagtttttttttaaacaatattcaaatattattttaaaaatcacaagtggtccaaaaaaaatgtaattcgaatttcgtttacattaatgaaattga |
46090694 |
T |
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| Q |
628 |
attgtaactgcagcaattaaatggcagataagacaag |
664 |
Q |
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| T |
46090693 |
attgtaactgcaactattaaatggcagataagacaag |
46090657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 34671328 - 34671288
Alignment:
| Q |
142 |
aaatgcaatagtgttaaatctcttgagtgagaattttgtca |
182 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||| |
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| T |
34671328 |
aaatacaatagtgttaaatctcttgagagagagttttgtca |
34671288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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