View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7922_low_4 (Length: 517)
Name: NF7922_low_4
Description: NF7922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7922_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 207 - 499
Target Start/End: Complemental strand, 3427088 - 3426796
Alignment:
| Q |
207 |
ttaatatttttcattcgattaaatacatgaataaattaaagtaaaatgagtcccactacccttacatgtttgtccgtgtgatggtgtgatgctcatgtga |
306 |
Q |
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| T |
3427088 |
ttaatatttttcattcgattaaatacatgaataaattaaagtaaaatgagtcccactacccttacatgtttgtccgtgtgatggtgtgatgctcatgtga |
3426989 |
T |
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| Q |
307 |
gcaaggtttccgtcagatatatcattatcataaaaatgagaagtgttatgaacactctcttttaaatacgatatctaacacttttttattggataaaatt |
406 |
Q |
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| T |
3426988 |
gcaaggtttcggtcagatatatcattattataaaaatgagaagtgttatgaacactctcttttaaatacgatatctaacactcttttattggataaaatt |
3426889 |
T |
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| Q |
407 |
aatttaaatctcacactttttaaatggtgcctacatagagtggagtaacccatatgagtttcatctaacaagaatgtgaatgttagattgaat |
499 |
Q |
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| T |
3426888 |
aatttaaatctcacactttttaaatggtgcttacatagattggagtaacccatatgggtttcatctaacaagagtgtgaatgttagattgaat |
3426796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 3427342 - 3427154
Alignment:
| Q |
15 |
aatatcatcttctttatacattgtttgtgtgagcatgcatctgtttgaacaaattattaagttaactgacttacatctctcattcacacacaactcaatc |
114 |
Q |
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| T |
3427342 |
aatatcatcttctttatacattgtttgtgtgagcatgcatctgtttgaacacattattaagttaactgacttacatctctcattcacacacaactcaatc |
3427243 |
T |
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| Q |
115 |
taatttattaagttcaacaattttaaccctaaactcctctggtgcaaactatttgaactaaaaatctgaacaaccatgtcaatagcaaa |
203 |
Q |
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| T |
3427242 |
taatttattaagttcaacaattttaaccctaaactcctctcgtgcaaactatttgaactaaaaatctgaacaaccatgtcaatagcaaa |
3427154 |
T |
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