View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7922_low_6 (Length: 367)
Name: NF7922_low_6
Description: NF7922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7922_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 15628889 - 15628549
Alignment:
| Q |
10 |
attatactcattccacattttgtaagtaaacaaatcctctattatcctctaccattcattaccttgcattgcaagcaattcccttagctgaattctctta |
109 |
Q |
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| T |
15628889 |
attatactcattccacattttgtcagtaaacaaatcctctattatcctctaccattcattaccttgcattgcaagcaattcccttagctgaattctctta |
15628790 |
T |
|
| Q |
110 |
ttcatcatgccaacccttgttcaattcttgatactagttttactattgttcaattttgtgccagttttatcgcaagttaatcagttcttgtatgcaggat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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| T |
15628789 |
ttcatcatgccaacccttgttcaattcttgatactagttttactattgttcaattttgtgtcagttttatcccaagttaaccagttcttgtatgcaggat |
15628690 |
T |
|
| Q |
210 |
tcaaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatggg |
309 |
Q |
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| T |
15628689 |
tcaaggatgttggtcccaacaatcttaccttgaatggttttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatggg |
15628590 |
T |
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| Q |
310 |
ccatgctttttacacattaccttttcagctaaggaactcga |
350 |
Q |
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| T |
15628589 |
ccatgctttttactcattaccttttcagctaaggaactcga |
15628549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 348
Target Start/End: Original strand, 22932985 - 22933121
Alignment:
| Q |
212 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggcc |
311 |
Q |
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||||||| |||| ||| |||| ||||||| || || ||||| |||||||||||||||| || ||||||||||||||| | ||| ||| |||||||| |
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| T |
22932985 |
aaggatggtggtgccagcaatttaaccttaaacggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggcc |
22933084 |
T |
|
| Q |
312 |
atgctttttacacattaccttttcagctaaggaactc |
348 |
Q |
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| T |
22933085 |
atgctttttactctcaaccttttcagctaaagaactc |
22933121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 22922603 - 22922526
Alignment:
| Q |
212 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaat |
289 |
Q |
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|||||||||||||| || || |||||||| ||||| | ||||||||||| |||||||| || ||||||||||||||| |
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| T |
22922603 |
aaggatgttggtccaaaaaacctaaccttaaatggtatagcagagatagaaaaaaatggtataataagattaacaaat |
22922526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 22932867 - 22932915
Alignment:
| Q |
91 |
ccttagctgaattctcttattcatcatgccaacccttgttcaattcttg |
139 |
Q |
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| T |
22932867 |
ccttagctgatttctcttgttcatcatgccaacccatcttcaattcttg |
22932915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 24382736 - 24382698
Alignment:
| Q |
251 |
gcagagatagagaaaaatgggatgataagattaacaaat |
289 |
Q |
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|||||||||||||||||||| || ||||||||||||||| |
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| T |
24382736 |
gcagagatagagaaaaatggtataataagattaacaaat |
24382698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 36386045 - 36386081
Alignment:
| Q |
253 |
agagatagagaaaaatgggatgataagattaacaaat |
289 |
Q |
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|||||||||||||||||| || ||||||||||||||| |
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| T |
36386045 |
agagatagagaaaaatggtataataagattaacaaat |
36386081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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