View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7922_low_7 (Length: 362)
Name: NF7922_low_7
Description: NF7922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7922_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 34607748 - 34607988
Alignment:
| Q |
13 |
aatatgtgttgttgtgaagcataattgtagcttctcgaagtattagtacaagtgtgtctacacacaaagtctttatgactaaaaaagaataaatgcannn |
112 |
Q |
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| T |
34607748 |
aatatgtgttgttgtgaagcataattgtagcttctcgaagtattagtacaagtgtgtctacacacaaagtctttatgactaaaaaagaataaatgcattt |
34607847 |
T |
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| Q |
113 |
nnnnactttcgtatgatcaaatgttttaataaattttggtatctatgctcaactgtttgttccaagg-attgactcataatttacatgttcctggttttt |
211 |
Q |
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| T |
34607848 |
ttttactttcgtatgatcaaatgttttaataaattttggtatctaagctcaactgtttgttccaaggaattgactcataatttacatgttcctggttttt |
34607947 |
T |
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| Q |
212 |
aaaatggattgataataatacctgcaacagtgcaaccaatg |
252 |
Q |
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| T |
34607948 |
aaaatggattgataataatacctgcaacagtgcaaccaatg |
34607988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 34598549 - 34598687
Alignment:
| Q |
13 |
aatatgtgttgttgtgaagcataattgtagcttctcgaagtattagtacaagtg-tgtctacacacaaagtctttatgactaaaaaagaataaatgcann |
111 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| || ||||||||| | |||||||| |||||||||||||||||| ||||||||| || |
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| T |
34598549 |
aatatgtgttgttgtgaagcataattgtagcttcttgaagtgttggtacaagtgttttctacacataaagtctttatgactaaatgagaataaatacatt |
34598648 |
T |
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| Q |
112 |
nnnnnactttcgtatgatcaaatgttttaataaattttg |
150 |
Q |
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| T |
34598649 |
tttttactttcgtatgatcaagtgttttaataaattttg |
34598687 |
T |
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