View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7923_high_3 (Length: 466)
Name: NF7923_high_3
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7923_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 7153368 - 7153804
Alignment:
| Q |
16 |
atacattctatttcttggataaatacttgtagaattagtaataagcagagatttatgacttatattgactctagt----acaatacaaccaaacacaaag |
111 |
Q |
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| T |
7153368 |
atacattctatttcttggataaatacttgtagagttagtaataagcagagatttatgacttatattgactatagtttatacaatacaaccaaacacaaag |
7153467 |
T |
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| Q |
112 |
caaccatatagctctcataacaccttcaacaaa----atctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaa |
207 |
Q |
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| T |
7153468 |
caaccatatagctctcataacaccttcaacaaattaaatctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaa |
7153567 |
T |
|
| Q |
208 |
gcaaacacacatgtttcttatacattaaatgtgtactcatacacacaaatacacacattggttccagtatctctgctgcaacctttcataagttgcactt |
307 |
Q |
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| T |
7153568 |
gcaaacacacatgtttcttatacattaaatgtgtactcatacacacaaatacacacattggttccagtatctctgctgcaacctttcataagttgcactt |
7153667 |
T |
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| Q |
308 |
cacttacagttgcaagggtcacatgtgcagctatctccacacttgcagccaccttcctccgctgcaacacccatttcagcaccctcaaaatggatctttg |
407 |
Q |
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| T |
7153668 |
cacttacagttgcaagggtcacatgtgcagctatctccacacttgcagccaccttcctcagctgcaacacccatttcagcaccctcaaaatggatctttg |
7153767 |
T |
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| Q |
408 |
ccggagcaacgcccagaatcacggtttctgtggtttc |
444 |
Q |
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| T |
7153768 |
ccggagcaacgcccataatcacggtttctgtggtttc |
7153804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 90 - 448
Target Start/End: Original strand, 7159548 - 7159905
Alignment:
| Q |
90 |
tacaatacaaccaaacacaaagcaaccatatagctctcataacaccttcaacaaaatctaa---catttcaattttctgaagatgagatctatgaccact |
186 |
Q |
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| T |
7159548 |
tacaagacaaccaaacacaaagcgatcata--gctctcataacaccttcaacaaaatctaagaacatttgaatttgatgaaggttagatccatgaccacc |
7159645 |
T |
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| Q |
187 |
ttatattattctaattaaaaagcaaacacacatgtttcttatacattaaatgtgtactcata--cacacaaatacacacattggttccagtat--ctctg |
282 |
Q |
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| T |
7159646 |
tcatattattctaa---aaaaggaaacaca--tgcttcttatatattaaatgtgtactaatatacacacaattacacatattggttccaatatatctctg |
7159740 |
T |
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| Q |
283 |
ctgcaacctttcataagttgcacttcacttacagttgcaagggtcacatgtgcagctatctccacacttgcagccaccttcctccgctgcaacacccatt |
382 |
Q |
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| T |
7159741 |
cttcaagagg-catatgatgcacttcatttgcagttgcaagggtcacatgtgcagctatccccacacttgcagccaccatcctcagctgctacacccatt |
7159839 |
T |
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| Q |
383 |
tcagcaccctcaaaatggatctttgccggagcaacgcccagaatcacggtttctgtggtttcgcct |
448 |
Q |
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| T |
7159840 |
tcagcaccttcgaattggatcttggccggaccaacgcccaaaatcacggtttctgtggtttcgcct |
7159905 |
T |
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