View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7923_low_1 (Length: 606)
Name: NF7923_low_1
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7923_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Complemental strand, 28609011 - 28608432
Alignment:
| Q |
18 |
agttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609011 |
agttgggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcattt |
28608912 |
T |
|
| Q |
118 |
ttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28608911 |
ttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgt |
28608812 |
T |
|
| Q |
218 |
ttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28608811 |
ttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcgtgaatggtt |
28608712 |
T |
|
| Q |
318 |
gcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctggg |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608711 |
gcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctggg |
28608612 |
T |
|
| Q |
418 |
atctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgc |
517 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28608611 |
atcttgtaagattttgtgttccagattggccactaggcttctccatatgagaagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgc |
28608512 |
T |
|
| Q |
518 |
aaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtattat |
597 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28608511 |
aaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcttgacgagtattat |
28608432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 595
Target Start/End: Original strand, 437895 - 438470
Alignment:
| Q |
20 |
ttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcattttt |
119 |
Q |
| |
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||||||||||| | |||||| ||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | || |
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| T |
437895 |
ttgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatacgaaaatttaaagtt |
437994 |
T |
|
| Q |
120 |
ggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgttt |
219 |
Q |
| |
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||||| |||||||||| ||| || ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| || |||||||| |
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| T |
437995 |
ggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgttt |
438094 |
T |
|
| Q |
220 |
caaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgc |
319 |
Q |
| |
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| | ||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||| ||| | | |||||||| ||||| ||||||||||| |
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| T |
438095 |
cgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttttcattagccgagttgtatatatcttcgtgaatggttgc |
438194 |
T |
|
| Q |
320 |
atattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggat |
419 |
Q |
| |
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||| | ||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| ||||||| |
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| T |
438195 |
atagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgctttctaactctagctgggat |
438294 |
T |
|
| Q |
420 |
ctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaa |
519 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||| |
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| T |
438295 |
tgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaa |
438394 |
T |
|
| Q |
520 |
aaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtatt |
595 |
Q |
| |
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||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
438395 |
aaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctacggcctgacgagtatt |
438470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 41 - 597
Target Start/End: Complemental strand, 13660359 - 13659803
Alignment:
| Q |
41 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
140 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||||||||| |
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| T |
13660359 |
catcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacga |
13660260 |
T |
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| Q |
141 |
tcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
240 |
Q |
| |
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|||||||| | |||||| |||||||||| | |||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| |
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| T |
13660259 |
tcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
13660160 |
T |
|
| Q |
241 |
gttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaa |
340 |
Q |
| |
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||||| ||||||||||| | ||||| |||||| ||||||| ||| | | || |||||||| || |||||||||| ||| |||||||||||||| |
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| T |
13660159 |
agtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcagagttatatatgtcctcatgaatggttgaataggatgacacaacatttaa |
13660060 |
T |
|
| Q |
341 |
cgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttcta |
440 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||||||||||| |||||| ||| |||||| ||||| |||||||| ||||||||||| | || | |
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| T |
13660059 |
ggtttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctcca |
13659960 |
T |
|
| Q |
441 |
gattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtc |
540 |
Q |
| |
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| |||| ||||||||| |||||||||| ||||||| ||||||| |||||| |||||||| |||||||||||| |||| ||| |||||||||| || |
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| T |
13659959 |
ggttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattc |
13659860 |
T |
|
| Q |
541 |
tagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtattat |
597 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||||| |||||| |||| ||||| |
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|
| T |
13659859 |
tagtagcattgaaagattcaacgaggctgataacccctgtagcctggcgagcattat |
13659803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 41 - 595
Target Start/End: Complemental strand, 13652859 - 13652305
Alignment:
| Q |
41 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
140 |
Q |
| |
|
|||||||||||| |||| ||| ||||| | |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||||| |
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|
| T |
13652859 |
catcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacga |
13652760 |
T |
|
| Q |
141 |
tcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
240 |
Q |
| |
|
|||||||| | |||||| |||||||||||| ||||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| |
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|
| T |
13652759 |
tcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
13652660 |
T |
|
| Q |
241 |
gttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaa |
340 |
Q |
| |
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||||| ||||||||||| | ||||| |||||| |||||||| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| |
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| T |
13652659 |
agtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaa |
13652560 |
T |
|
| Q |
341 |
cgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttcta |
440 |
Q |
| |
|
||| ||||| | |||||| || ||||||| | |||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || | |
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|
| T |
13652559 |
ggttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctcca |
13652460 |
T |
|
| Q |
441 |
gattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtc |
540 |
Q |
| |
|
| ||| |||||||||| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| || |
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| T |
13652459 |
ggttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattc |
13652360 |
T |
|
| Q |
541 |
tagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtatt |
595 |
Q |
| |
|
|||||||||||||||| | ||||||| | |||||||||| ||| || |||||||| |
|
|
| T |
13652359 |
tagtggcattgaaagactgaatgaggttgataacccctatagcgtggcgagtatt |
13652305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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