View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7923_low_12 (Length: 260)
Name: NF7923_low_12
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7923_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 51393352 - 51393123
Alignment:
| Q |
12 |
catcatcatgacccattccaacatcctgcgccaacgctcttctcctaaacgtatcctcttcttccctaaccaaccaccttctcttcaaattcttcctcgg |
111 |
Q |
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| T |
51393352 |
catcatcatgacccattccaacatcctgcgccaacgctcttctcctaaacgtatcctcttcttccctaaccaaccaccttctcttcaaattcttcctcgg |
51393253 |
T |
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| Q |
112 |
agaagacggtggagccgccctattccgacgagggagaacgaacaagagaaaagagaggaagaatgtgtagacgaagatgagagaggctctgaacgctttg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51393252 |
agaagacggtggagccgccctattccgacgagggagaacgaacaagagaaaagagaggaagaatgtgtagacgaagatgagagaggctctgaacgctttg |
51393153 |
T |
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| Q |
212 |
agaagaggaattatacggttgctggctccc |
241 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
51393152 |
agaagaggaattatacggttgctggctccc |
51393123 |
T |
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