View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7923_low_14 (Length: 238)

Name: NF7923_low_14
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7923_low_14
NF7923_low_14
[»] chr5 (3 HSPs)
chr5 (1-126)||(32009555-32009680)
chr5 (175-225)||(32009508-32009558)
chr5 (63-95)||(32372502-32372534)
[»] chr6 (1 HSPs)
chr6 (62-103)||(35069432-35069473)
[»] chr8 (4 HSPs)
chr8 (50-102)||(1929948-1930000)
chr8 (59-95)||(1058230-1058266)
chr8 (59-95)||(14956451-14956487)
chr8 (59-95)||(40981008-40981044)
[»] chr4 (4 HSPs)
chr4 (62-95)||(44797770-44797803)
chr4 (63-95)||(44863112-44863144)
chr4 (59-95)||(45935369-45935405)
chr4 (63-95)||(47119095-47119127)
[»] chr7 (2 HSPs)
chr7 (59-95)||(18865206-18865242)
chr7 (63-95)||(22296365-22296397)
[»] chr3 (1 HSPs)
chr3 (59-95)||(28240214-28240250)
[»] chr2 (3 HSPs)
chr2 (61-93)||(948425-948457)
chr2 (4-36)||(2195914-2195946)
chr2 (59-95)||(27317267-27317303)
[»] chr1 (4 HSPs)
chr1 (59-95)||(1510465-1510501)
chr1 (59-95)||(27820486-27820522)
chr1 (59-95)||(41195350-41195386)
chr1 (59-95)||(47498989-47499025)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 32009680 - 32009555
Alignment:
Q  1 aacaattcaacttcattttatctttttctataaaaacatgtgatatgagcttataaagaagcgcttgtgctataagatgcaaataagttgtttatgaaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32009680 aacaattcaacttcattttatgtttttctataaaaacatgtcatatgagcttataaagaagcgcttgtgctataagatgcaaataagttgtttatcaaaa 32009581  T
Q  101 cagaacagaccctattcattagacat 126  Q
    |||||||||||||| |||||||||||    
T  32009580 cagaacagaccctactcattagacat 32009555  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 32009558 - 32009508
Alignment:
Q  175 acatggtcgttgatgaaagaaattgtaataccaagtcactaactcttattg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32009558 acatggtcgttgatgaaagaaattgtaataccaagtcactaactcttattg 32009508  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 32372534 - 32372502
Alignment:
Q  63 gcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||| ||||||||||||||||||    
T  32372534 gcttgtgctataagctgcaaataagttgtttat 32372502  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 35069473 - 35069432
Alignment:
Q  62 cgcttgtgctataagatgcaaataagttgtttatgaaaacag 103  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  35069473 cgcttgtgctataagctgcaaataagttgtttatcaaaacag 35069432  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 1930000 - 1929948
Alignment:
Q  50 cttataaagaagcgcttgtgctataagatgcaaataagttgtttatgaaaaca 102  Q
    |||||| | |||||||||||||||||| ||||| |||||||||||| ||||||    
T  1930000 cttatacataagcgcttgtgctataagctgcaagtaagttgtttatcaaaaca 1929948  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 1058230 - 1058266
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||||||| |||||||||| |||||||    
T  1058230 aagcgcttgtgctataagctgcaaataagctgtttat 1058266  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 14956451 - 14956487
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  14956451 aagcgattgtgctataagctgcaaataagttgtttat 14956487  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 40981044 - 40981008
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||||||| |||||||||| |||||||    
T  40981044 aagcgcttgtgctataagctgcaaataagctgtttat 40981008  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 44797803 - 44797770
Alignment:
Q  62 cgcttgtgctataagatgcaaataagttgtttat 95  Q
    ||||||||||||||| ||||||||||||||||||    
T  44797803 cgcttgtgctataagttgcaaataagttgtttat 44797770  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 44863112 - 44863144
Alignment:
Q  63 gcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||| ||||||||||||||||||    
T  44863112 gcttgtgctataagctgcaaataagttgtttat 44863144  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 45935369 - 45935405
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  45935369 aagcgcttgagctataagctgcaaataagttgtttat 45935405  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 47119095 - 47119127
Alignment:
Q  63 gcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||| ||||||||||||||||||    
T  47119095 gcttgtgctataagttgcaaataagttgtttat 47119127  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 18865206 - 18865242
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  18865206 aagcgtttgtgctataagctgcaaataagttgtttat 18865242  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 22296365 - 22296397
Alignment:
Q  63 gcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||| ||||||||||||||||||    
T  22296365 gcttgtgctataagctgcaaataagttgtttat 22296397  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 28240250 - 28240214
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||||||| |||| |||||||||||||    
T  28240250 aagcgcttgtgctataagctgcagataagttgtttat 28240214  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 948425 - 948457
Alignment:
Q  61 gcgcttgtgctataagatgcaaataagttgttt 93  Q
    |||||||||||||||| ||||||||||||||||    
T  948425 gcgcttgtgctataagctgcaaataagttgttt 948457  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 2195946 - 2195914
Alignment:
Q  4 aattcaacttcattttatctttttctataaaaa 36  Q
    |||| ||||||||||||||||||||||||||||    
T  2195946 aatttaacttcattttatctttttctataaaaa 2195914  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 27317267 - 27317303
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  27317267 aagcgtttgtgctataagctgcaaataagttgtttat 27317303  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 1510465 - 1510501
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||||||||| |||||||| |||||||    
T  1510465 aagcgcttgtgctataagatacaaataagctgtttat 1510501  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 27820486 - 27820522
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  27820486 aagcgcttatgctataagctgcaaataagttgtttat 27820522  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 41195350 - 41195386
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    |||||||||||||||||| |||||||||||| |||||    
T  41195350 aagcgcttgtgctataagctgcaaataagttatttat 41195386  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 47498989 - 47499025
Alignment:
Q  59 aagcgcttgtgctataagatgcaaataagttgtttat 95  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  47498989 aagcacttgtgctataagctgcaaataagttgtttat 47499025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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