View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7923_low_2 (Length: 503)
Name: NF7923_low_2
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7923_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 1567804 - 1568267
Alignment:
| Q |
18 |
atagtaaccttaattcttattttttccgaacttgctttagatctaatctaggatctatgtggaaaattttcatgatgggtttctctctctttctaaaaca |
117 |
Q |
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| T |
1567804 |
atagtaaccttaattcttattttttccgaacttgctttagatctaatctaggatctatgtggaaaattttcatgatgggtttctctctctttctaaaaca |
1567903 |
T |
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| Q |
118 |
gtggtaattgtagaatttacttaacgttgaatttacggtgaatttttgtgaaattacagtgcattgtggtttaagcaaaatcttgattttgaagcttttc |
217 |
Q |
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| T |
1567904 |
gtggtaattgtagaatttacttaacgttgaatttacggtgaatttttgtgaaattacagtgcattgtggtttaagcaaaatcttgattttgaagcttttc |
1568003 |
T |
|
| Q |
218 |
tataatcacttttcaaactcgatgatttcaaatataagcaactattgatcaaagaaagttgatgtacttgatttaaaatttgaatcaaatacatccaatt |
317 |
Q |
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| T |
1568004 |
tataatcacttttcaaactcgatgatttcaaatataagcaactattgatcaaagaaagttgacatacttggtttaaaatttgaatcaaatacatccaatt |
1568103 |
T |
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| Q |
318 |
cttttttatcaatttttacttatatttaagacccgattaatattaatttaatctcgaaaaagaaagtttgttgggaataaccgaatggtgatgaattcta |
417 |
Q |
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| T |
1568104 |
cttttttatcaatttttagttatatttaagacccgattaatattaatttaatctcgaaaaagaaagtttgttgggaataaccgaatggtgatgaattcta |
1568203 |
T |
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| Q |
418 |
gttaagtgtgaataattcgaaatctaagtttgaattttgactgaaacaatttttgcgtcggtct |
481 |
Q |
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| T |
1568204 |
gttaagtgtgaataattcaaaatctaagtttgaattttgagtgaaacaatttttgcgtcagtct |
1568267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 21567983 - 21567921
Alignment:
| Q |
250 |
tataagcaactattgatcaaagaaagttgatgtacttgatttaaaatttgaatcaaatacatc |
312 |
Q |
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||||| ||| ||||||||||||||||||| |||| |||||||||| ||| || |||||||||| |
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| T |
21567983 |
tataatcaaatattgatcaaagaaagttggtgtatttgatttaaattttcaaccaaatacatc |
21567921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 51812048 - 51812088
Alignment:
| Q |
272 |
aaagttgatgtacttgatttaaaatttgaatcaaatacatc |
312 |
Q |
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| T |
51812048 |
aaagttaatgtatttgatttaaaatttgattcaaatacatc |
51812088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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