View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7923_low_4 (Length: 441)
Name: NF7923_low_4
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7923_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 54 - 428
Target Start/End: Complemental strand, 28949000 - 28948626
Alignment:
| Q |
54 |
cacttttttcataggccttcaaaagcatacacaacaggaacaaggaaaagaagaaaggttcacactgatgaagaaggaattgaaacaagatggcacaaaa |
153 |
Q |
| |
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||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
28949000 |
cacttttttcacaggccatctaaagcatacacaacaggaacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaa |
28948901 |
T |
|
| Q |
154 |
cagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948900 |
cagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaa |
28948801 |
T |
|
| Q |
254 |
gaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtcc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948800 |
gaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtcc |
28948701 |
T |
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| Q |
354 |
agtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948700 |
agtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
28948626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 43015191 - 43015272
Alignment:
| Q |
249 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
330 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || || | ||||||||||||| |
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| T |
43015191 |
gagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
43015272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 54 - 329
Target Start/End: Complemental strand, 34830145 - 34829870
Alignment:
| Q |
54 |
cacttttttcataggccttcaaaagcatacacaacaggaacaaggaaaagaagaaaggttcacactgatgaagaaggaattgaaacaagatggcacaaaa |
153 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
34830145 |
cacttctttcacaggccatctaaagcatacacaacaggaacaaggaaaagaagaaaggttcaaactgatgaagaaggaagtgaaacaagatggcacaaaa |
34830046 |
T |
|
| Q |
154 |
cagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaa |
253 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830045 |
cagggaaaactagaccagttattattgaaggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaa |
34829946 |
T |
|
| Q |
254 |
gaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34829945 |
gaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaag |
34829870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 34814073 - 34813981
Alignment:
| Q |
336 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34814073 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
34813981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 30505888 - 30505976
Alignment:
| Q |
219 |
tacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaaga |
307 |
Q |
| |
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||||| |||||||||| |||| ||||| ||||| || ||||||||||||||||| || || ||||| ||| |||||||||||||||| |
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| T |
30505888 |
tacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagtgatgaagaagagaaaga |
30505976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 30513140 - 30513179
Alignment:
| Q |
73 |
caaaagcatacacaacaggaacaaggaaaagaagaaaggt |
112 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||| |
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| T |
30513140 |
caaaggcatacacaacaggaacaagaaaaagaagaaaggt |
30513179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 32 - 330
Target Start/End: Original strand, 4235570 - 4235868
Alignment:
| Q |
32 |
tagcagagatggtcaaattcgccacttttttcataggccttcaaaagcatacacaacaggaacaaggaaaagaagaaaggttcacactgatgaagaagga |
131 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4235570 |
tagcaaagatggtcaaattcgccacttttttcataggccttcaaaagcatacacaacaggaacaaggaaaagaagaaaggttcacactgatgaagaagga |
4235669 |
T |
|
| Q |
132 |
attgaaacaagatggcacaaaacagggaaaactagaccagttattattgatggtgttatgaaaggtttcaagaagatactagtcctctacaccaactatg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||| || || || |||||||| |||| || || ||||||||| | || ||||||||||||||| |
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| T |
4235670 |
attgaaacaagatggcacaaaacagggaaaactagagcaattttttccaatggtgttgtgaagggatttaagaagatattggtactctacaccaactatt |
4235769 |
T |
|
| Q |
232 |
gaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
330 |
Q |
| |
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| | | || || |||||||| ||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| |||| |||||||| |
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| T |
4235770 |
gcaaagatggaaaaccagagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaattcgttgcttcaaaga |
4235868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 173
Target Start/End: Original strand, 38886887 - 38887000
Alignment:
| Q |
60 |
tttcataggccttcaaaagcatacacaacaggaacaaggaaaagaagaaaggttcacactgatgaagaaggaattgaaacaagatggcacaaaacaggga |
159 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||| || |||| ||| |||||||||||||||||||| | |
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| T |
38886887 |
tttcacaggccatcaaaagcatacacaacaggaacaagaaaaagaagaaaagtgcacacagatgctgatggaagtgagacaagatggcacaaaacaggta |
38886986 |
T |
|
| Q |
160 |
aaactagaccagtt |
173 |
Q |
| |
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|||| || |||||| |
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|
| T |
38886987 |
aaacaaggccagtt |
38887000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 4242608 - 4242696
Alignment:
| Q |
58 |
tttttcataggccttcaaaagcatacacaacaggaacaaggaaaagaagaaaggttcacactgatgaagaaggaattgaaacaagatgg |
146 |
Q |
| |
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|||||||||||||||| |||| ||||||| | |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
4242608 |
tttttcataggccttctaaagtatacacatctggaacaaggacaagaagaaaggttcacaccaatgaagaaggatgtgaaacaagatgg |
4242696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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