View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7923_low_6 (Length: 396)
Name: NF7923_low_6
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7923_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 51827450 - 51827817
Alignment:
| Q |
18 |
ggttaaactatttaacactgcgatttctcttata---tttactaatatttacgttgatttagcacctaacacaagccatggagcggattcagcatgcttt |
114 |
Q |
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| T |
51827450 |
ggttaaactatttaacactgcgatttctcttatactatttactaatatttacgttgatttagcacctaacacaagccatggagcggattcagcatgcttt |
51827549 |
T |
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| Q |
115 |
tctggagcagcagagtcaggacagattctttgatatggtgagtagacagtaactctgcaaacacaacataagaaaataataatatcataagtaataaata |
214 |
Q |
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| T |
51827550 |
tctggagcagcagagtcaggacagattctttgatatggtgagtagacagaaactctgcaaacacaacataagaaaataataatatcataagtaataaata |
51827649 |
T |
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| Q |
215 |
acaagaggcaaatcaatttgcacaatgaactagaatctagattaagaatttttaatactaagaaaatgacatgataaattt-cagtcacaaaaaagccag |
313 |
Q |
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| T |
51827650 |
acaagaggcaaatcaatttgcacaatgaactagaatctagattaag-atttttaatactaagaaaatgacatgataaatttccagtcacaaaaaagccag |
51827748 |
T |
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| Q |
314 |
atttatgttatgcatgcttcaccaaaagctc-caaaaatgttcaatccaaattagttgatgttgaattt |
381 |
Q |
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| T |
51827749 |
atttatgttatgcatgcttcaccaaaagctcaaaaaaatgttcaatccaaattagttgatgttgaattt |
51827817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 51824200 - 51824288
Alignment:
| Q |
18 |
ggttaaactatttaacactgcgatttctcttatatttactaatatttacgttgatttagcacctaacacaagccatggagcggattcag |
106 |
Q |
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| T |
51824200 |
ggttaaactacttaaaactgcaattgctctcatatttactgatatttacgttgatttagcacctaaaacaagtcattgagtggattcag |
51824288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 51824422 - 51824498
Alignment:
| Q |
209 |
taaataacaagaggcaaatcaatttgcacaatgaactagaatctagattaagaatttttaatactaagaaaatgacat |
286 |
Q |
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||||||||||||||| || |||||||||||||| |||||||| | |||||| ||||| ||||||||||||||||| |
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| T |
51824422 |
taaataacaagaggccaaccaatttgcacaatggactagaattaaaattaag-attttctttactaagaaaatgacat |
51824498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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