View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7923_low_7 (Length: 383)

Name: NF7923_low_7
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7923_low_7
NF7923_low_7
[»] chr3 (6 HSPs)
chr3 (11-374)||(2257167-2257534)
chr3 (24-137)||(52653524-52653636)
chr3 (30-133)||(50914667-50914769)
chr3 (24-71)||(23686025-23686072)
chr3 (24-71)||(24058262-24058309)
chr3 (42-121)||(33709591-33709670)
[»] chr5 (2 HSPs)
chr5 (24-137)||(36202866-36202978)
chr5 (31-137)||(11043029-11043134)
[»] chr8 (2 HSPs)
chr8 (24-137)||(12729141-12729253)
chr8 (52-137)||(28696338-28696422)
[»] chr4 (5 HSPs)
chr4 (24-136)||(20251147-20251258)
chr4 (24-118)||(122829-122922)
chr4 (30-139)||(48780114-48780221)
chr4 (40-137)||(24129597-24129693)
chr4 (53-137)||(1495028-1495110)
[»] chr7 (2 HSPs)
chr7 (30-137)||(12239877-12239982)
chr7 (66-137)||(24533198-24533269)
[»] chr6 (1 HSPs)
chr6 (30-137)||(28612400-28612504)
[»] chr2 (1 HSPs)
chr2 (24-137)||(34681354-34681466)
[»] chr1 (4 HSPs)
chr1 (24-100)||(49053555-49053630)
chr1 (24-100)||(49061135-49061210)
chr1 (24-106)||(42263734-42263817)
chr1 (47-121)||(12634262-12634334)
[»] scaffold0007 (1 HSPs)
scaffold0007 (30-114)||(215647-215730)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 2257534 - 2257167
Alignment:
Q  11 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgttt------g 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      |    
T  2257534 tacaaatgtttagtgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattt-agagaaaagatgtattgtttttgtttg 2257436  T
Q  105 acaattgaagcaatgtaggcattcatgaacaaattttggatataacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgccaaaatca 204  Q
    |||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2257435 acaattga-gcaatgtagtcactcatgaacaaattttggatattacataaaagaaataagcaattggttgaaaaatcaccaccctgtgttgccaaaatca 2257337  T
Q  205 caaggcttcaatgaaatagttagcgaacgagacgggtgtgatgctcaatcgatccttccatgctacagagaccgggaacataaactcgacatcaaataca 304  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||| |||    
T  2257336 caaggcttcaatgaaataggtagcgaacgtgacgggtgtgatgctcaatcgatcattccatgccacagagaccgggaacataaacttgacaacaaacaca 2257237  T
Q  305 tcggatttgagaaaatttgattcttcgcacggttttcatccatattcacaactttcaactgttttcttct 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2257236 tcggatttgagaaaatttgattcttcgcacggttttcatccatatccacaactttcaactgttttcttct 2257167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 52653524 - 52653636
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 123  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| | ||| |||||| |||||| ||||||||||||||||||| ||||||||      
T  52653524 tgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaatacc-ttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  124 cattcatgaacaaa 137  Q
    ||||||||||||||    
T  52653623 cattcatgaacaaa 52653636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 50914769 - 50914667
Alignment:
Q  30 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 129  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||| || |||||||||||||||||| |  ||||||    
T  50914769 agaaattttcaaaatatatttgaaaagttgcaatggttaaatagagacc-ttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattca 50914671  T
Q  130 tgaa 133  Q
    ||||    
T  50914670 tgaa 50914667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 23686025 - 23686072
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 71  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  23686025 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 23686072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 24058262 - 24058309
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaat 71  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  24058262 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaat 24058309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 33709591 - 33709670
Alignment:
Q  42 aatatatttgaaaagttgcaatgcttaaatagagaccattt-tagagaaaagatgtattgtttgacaattgaagcaatgta 121  Q
    |||||||||| |||||||||||| ||||| ||||||| ||| || | ||||| |||| || || |||||||||||||||||    
T  33709591 aatatatttggaaagttgcaatggttaaa-agagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 36202866 - 36202978
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 123  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| || |||||||||||| |||||||      
T  36202866 tgtgagagaaatttttaaaatatatttgaaaagttgcaatggttaaaaagagacc-ttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaac 36202964  T
Q  124 cattcatgaacaaa 137  Q
    ||||||||||||||    
T  36202965 cattcatgaacaaa 36202978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 11043134 - 11043029
Alignment:
Q  31 gaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcat 130  Q
    |||||||  ||||||||||||||||||| ||  | ||||||| ||| | ||||||||||||| |||| |||||| | ||| || |||| ||| |||||||    
T  11043134 gaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatc-ttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccattcat 11043036  T
Q  131 gaacaaa 137  Q
    |||||||    
T  11043035 gaacaaa 11043029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 12729141 - 12729253
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 123  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| || | ||||||||||||||| ||      
T  12729141 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagacc-ttttagagaaaaggtgtaatgctcgacaattgaagcaatataac 12729239  T
Q  124 cattcatgaacaaa 137  Q
    ||||||||| ||||    
T  12729240 cattcatgagcaaa 12729253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 28696422 - 28696338
Alignment:
Q  52 aaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 137  Q
    |||||||||||||  |||||||||| | ||||||||||||  |||| || || |||||||||||||||||  ||||||||||||||    
T  28696422 aaaagttgcaatgggtaaatagagatc-ttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa 28696338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 20251147 - 20251258
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 123  Q
    ||||| ||||||||  |||||||||||| |||||||||||  ||||||||||| | ||||||||||||  |||||||||||| ||||||| |||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatc-ttttagagaaaaagtgtattgtttgataattgaaacaatgtaac 20251245  T
Q  124 cattcatgaacaa 136  Q
     ||||||||||||    
T  20251246 tattcatgaacaa 20251258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaat 118  Q
    ||||| ||||||||| ||| ||||||||||||||||||||  ||||||||| | ||||||||||||||  ||||||| |||||||||||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaataga-aacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 48780221 - 48780114
Alignment:
Q  30 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 129  Q
    ||||||||  |||||||||||| |||||||||||| ||||| | ||| | ||||||||||||| | || |||||||||||||||||||| ||   |||||    
T  48780221 agaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatc-ttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  130 tgaacaaatt 139  Q
    |||| |||||    
T  48780123 tgaataaatt 48780114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 24129693 - 24129597
Alignment:
Q  40 aaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 137  Q
    |||||||||||  ||||| |||||| ||||||| || |  |||| ||| |||| ||||||| |||| |||||||||||||||  ||||||||||||||    
T  24129693 aaaatatatttagaaagtcgcaatggttaaatataggct-ttttggaggaaaggtgtattgcttgataattgaagcaatgtaaccattcatgaacaaa 24129597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 1495110 - 1495028
Alignment:
Q  53 aaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 137  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||  | || ||| |||||||||| ||  ||||||||||||||    
T  1495110 aaagttgcaatggttaaa-agagaccattt-agagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaa 1495028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 12239982 - 12239877
Alignment:
Q  30 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 129  Q
    ||||||||| ||||||||||||||| ||||||||| ||||| | ||||| |||||| |||||  ||||||| ||||||||||| ||||||||  ||||||    
T  12239982 agaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagacc-ttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  130 tgaacaaa 137  Q
    ||||||||    
T  12239884 tgaacaaa 12239877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 24533198 - 24533269
Alignment:
Q  66 ttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattcatgaacaaa 137  Q
    |||||||||||   |||||||||||| ||||| ||||| ||||||| |||||||||  ||||||||||||||    
T  24533198 ttaaatagagatttttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaa 24533269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 28612504 - 28612400
Alignment:
Q  30 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtaggcattca 129  Q
    ||||||||| ||||||||||| |||  ||| |||| |||||||||| || |||||||| |||| ||||||||||||||||||||||||| ||   |||||    
T  28612504 agaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggcc-ttttagagcaaaggtgtattgtttgacaattgaagcaatataacaattca 28612408  T
Q  130 tgaacaaa 137  Q
    ||||||||    
T  28612407 tgaacaaa 28612400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 34681466 - 34681354
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgtagg 123  Q
    ||||| ||||||||  |||||||||||| || ||||||||| ||||| | | ||| ||||||||||||  |||| ||||||||||||||||||||||       
T  34681466 tgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaacc-ttttagagaaaaagtgtaatgtttgacaattgaagcaatgttac 34681368  T
Q  124 cattcatgaacaaa 137  Q
    |||| |||||||||    
T  34681367 cattgatgaacaaa 34681354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 49053555 - 49053630
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 100  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| |||||| |||||||    
T  49053555 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaaaaggtgtattg 49053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 49061135 - 49061210
Alignment:
Q  24 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattg 100  Q
    ||||| ||||||||| |||||||||||| |||||||||||| ||||||| ||||| |||||| ||| || |||||||    
T  49061135 tgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagacc-ttttagtgaataggtgtattg 49061210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 42263817 - 42263734
Alignment:
Q  24 tgtgatagaaatttcaaaaatata--tttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgac 106  Q
    ||||| || |||||| ||||||||  ||||||||||||||||| || |||||||| ||||| || |||||||||||||| |||||    
T  42263817 tgtgaaaggaatttccaaaatataaatttgaaaagttgcaatgattgaatagaga-catttaagtgaaaagatgtattgcttgac 42263734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 12634262 - 12634334
Alignment:
Q  47 atttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaagcaatgta 121  Q
    ||||||||| |||||||| ||||||||||||  |||||  |||| ||| || |||||||| ||||||||||||||    
T  12634262 atttgaaaaattgcaatgattaaatagagac--ttttaatgaaaggatataatgtttgactattgaagcaatgta 12634334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 215647 - 215730
Alignment:
Q  30 agaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccattttagagaaaagatgtattgtttgacaattgaag 114  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||||| | ||||  |||||| ||||| |||||||| |||||||    
T  215647 agaaatttccaaaatatatttagaaagttgcaatggttaaatagagatc-ttttgaagaaaatatgtaatgtttgacgattgaag 215730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University