View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7923_low_8 (Length: 350)
Name: NF7923_low_8
Description: NF7923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7923_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 31704184 - 31704508
Alignment:
| Q |
17 |
gaaagtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactggaaaagagagaaacgagaaag |
116 |
Q |
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| T |
31704184 |
gaaagtgagaaggaaagcattaatgaatcagttgaaacacaactcttctttgatatgttgatgatggtagtacttgcaggaaaagagagaaacaagaaag |
31704283 |
T |
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| Q |
117 |
aatggattaagttgatttcctctgctggttttagtgactacaagattactccaattttaggtttaaggtcactaattgagatctatccataacatatcat |
216 |
Q |
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| T |
31704284 |
aatggattaagttgatttcctctgctggttttagcgactacaagattactccaattttaggtttaaggtcactaattgagatctatccataacatatcat |
31704383 |
T |
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| Q |
217 |
atctagctagtcatttgtcattatcattggtacttgtgtcattaattatgggtgggcattaatatgtaaaaactagatttttctagtgagagaagcttca |
316 |
Q |
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| T |
31704384 |
atctaggtggtcatttgtcattatcatcggtacttgtgtcattaattatgggtgggcattaatatgtaaaaattagatttttctagtgagagaagcttca |
31704483 |
T |
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| Q |
317 |
tcttttctctaacctgtgttcttct |
341 |
Q |
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| T |
31704484 |
tcttttctctgacctatgctcttct |
31704508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 31684872 - 31685058
Alignment:
| Q |
20 |
agtgagaaggaaagcattaaagaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactggaaaagagagaaacgagaaagaat |
119 |
Q |
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| T |
31684872 |
agtgagaagggaaacattaatgaatcagttgaaacacaactcttctttgatatgtttatgatggtagtatttgcaggaaaagagagaaacgagaaagaat |
31684971 |
T |
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| Q |
120 |
ggattaagttgatttcctctgctggttttagtgactacaagattactccaattttaggtttaaggtcactaattgagatctatccat |
206 |
Q |
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| T |
31684972 |
ggattaagttgatttcctctgctggttttagtgactacaagattactccaattttaggatcaacgtctatgattgagatctatccat |
31685058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 31712618 - 31712798
Alignment:
| Q |
41 |
gaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctg |
140 |
Q |
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| T |
31712618 |
gaatcagttgaaacacaactcttctttgatatgttgatgatggccctattaacaggaaaagagagaaatgagaaggaatggatgaaattgatttctttgg |
31712717 |
T |
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| Q |
141 |
ctggttttagtgactacaagattactccaattttaggtttaaggtcactaattgagatctatccataacatatcatatcta |
221 |
Q |
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| T |
31712718 |
ctggttttaatgactacaagataacaccaattctaggcttaaggtccatgattgagatctatccataaaatataatatcta |
31712798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 31735564 - 31735706
Alignment:
| Q |
41 |
gaatcagttgaaacccaactcttctttgatatgttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctg |
140 |
Q |
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| T |
31735564 |
gaatcggttgaaacaaaactcttctttgatatgttgatgatggtaacactcaccggaaaagagagaaccaagaaagaatgggttaaattgatttcttcgg |
31735663 |
T |
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| Q |
141 |
ctggttttagtgactacaagattactccaattttaggtttaag |
183 |
Q |
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| T |
31735664 |
ccggtttttgtgactacaagataactccaattttagggttaag |
31735706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 31715552 - 31715707
Alignment:
| Q |
51 |
aaacccaactcttctttgatatgttgatgatggtagtactcactggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttag |
150 |
Q |
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|||| |||||||||||||||||| | |||||||| | ||| ||||||||||||| | ||||||||||| ||||||||||||||||||| || || | |
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| T |
31715552 |
aaacacaactcttctttgatatgctcatgatggtgttggccaccggaaaagagagaaccaagaaagaatgggttaagttgatttcctctgcagggttcaa |
31715651 |
T |
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| Q |
151 |
tgactacaagattactccaattttaggtttaaggtcactaattgagatctatccat |
206 |
Q |
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| T |
31715652 |
tgactacaagataactccagtattgggtttaaggtctgtcattgagatttatccat |
31715707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 30571105 - 30571178
Alignment:
| Q |
94 |
tggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaagattactc |
167 |
Q |
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| T |
30571105 |
tggaaaagagagaaatgaaaaagaatggtctaatttgtttttatctgctggttttagtaactacaagataactc |
30571178 |
T |
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