View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7924_high_2 (Length: 359)
Name: NF7924_high_2
Description: NF7924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7924_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 43157611 - 43157259
Alignment:
| Q |
6 |
aagtgtatcatttgcttcaagaggtcttatagattcgatcttcgaccctatttataaaatattgaataaaagacatgttgatatgaagttaagagtttga |
105 |
Q |
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| T |
43157611 |
aagtgtatcatttgcttcaagaggtcttatagattccatcttcgaccctatttgtaaaatattgaataaaagacatgctgatatgaatttaagagtttga |
43157512 |
T |
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| Q |
106 |
ttgagtttatcgcaacattcctttaatcaacttgaagtaatcatatttgaggtgtgttgaatnnnnnnngtgtgtatatcatacattcaagattgagctt |
205 |
Q |
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| T |
43157511 |
ttgagtttatcgcaacattcctttaatcaacttgaagtaatcatatttgaggtgtgttgaataaaaaaagtgtgtatctcatatattcaagattgagctt |
43157412 |
T |
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| Q |
206 |
tgatttgtcacattgtaagaatctacggttcattcaactagactcaactccgttggttctaattacacctcgttaattaaatatttgtgtgccta--ttg |
303 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43157411 |
tgatttgtcacattgtgagaatctatagttcattcaactagactcaactccgttggttctaattacacctcgttaattaaatatttgtgtgcctattttg |
43157312 |
T |
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| Q |
304 |
agaaatatattattgaaagtttatttaaagtaaaaatgatgtccatctcattga |
357 |
Q |
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| T |
43157311 |
agaaatatattattgaaagtttatttaaagtaaaaatgatggcca-ctcattga |
43157259 |
T |
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