View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7924_low_1 (Length: 559)
Name: NF7924_low_1
Description: NF7924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7924_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Complemental strand, 28779709 - 28779168
Alignment:
| Q |
7 |
tatattattctaaaaatcctcccccttacac--cctagtcattagttcaaaatattcacacctcaaacagcaaggaaaccctccactctgcccacttcat |
104 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28779709 |
tatattattctaaaaaacctccccctaacacaccctagtcattagttcaaaatattcacacctcaaacagcaaggaaaccctccactctgcccacttcat |
28779610 |
T |
|
| Q |
105 |
cacataataaccaagaactaaatcattaaaagtcataatagagtcaatatatcaccgacactttaaattaaaagtgtgtccggtgtccaacatgtatcag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28779609 |
cacataataaccaagaactaaatcattaaaagtcataatagagtcaatatatcaccgacactttaaattaaaagtgtgtccggtgtccaacatgtatcag |
28779510 |
T |
|
| Q |
205 |
cgtcagtgtctcaca-gaaacctgcatatgcagctatattcaattacttctattttcttaaattactgctagta---tctacatgtcagtgccagcatca |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
28779509 |
cgtcagtgtctcacacgaaacctgcatatgcagctatattcaattacttctattttcttaaattactgctagtatcttctacatgtcagtgccagtatca |
28779410 |
T |
|
| Q |
301 |
tgtctgatgtctgtgtttcatcaaaacaaacctcccagcataattatttattttggaaactcggtatccggtttaaagacctactaatcctcccagcaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28779409 |
tgtctgatgtctgtgtttcatcaaaacaaacctcccagcataattatttcttttggaaactcggtatccggtttaaagacctactaatcctcccagcaaa |
28779310 |
T |
|
| Q |
401 |
ttaactgaagtagttcacacaacgaaattggcgaatttccaccgatg-cttnnnnnnncgacaaatccttgttcactcgaactcacagacacatcaaatg |
499 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28779309 |
ttaactgaagtagttcacacaacaaaattggcaaatttccaccgatgcctaaaaaaaacgacaaatcctcgttcactcgaactcacagacacatcaaatg |
28779210 |
T |
|
| Q |
500 |
agaaaatctttcaacaaattgacactataacaaacttaattc |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28779209 |
agaaaatctttcaacaaattgacactataacaaacttaattc |
28779168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 47536015 - 47536052
Alignment:
| Q |
344 |
ttatttattttggaaactcggtatccggtttaaagacc |
381 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
47536015 |
ttatttattttgaaaactcggtatccggttcaaagacc |
47536052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University