View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7924_low_3 (Length: 349)

Name: NF7924_low_3
Description: NF7924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7924_low_3
NF7924_low_3
[»] chr3 (9 HSPs)
chr3 (10-265)||(13332060-13332315)
chr3 (10-232)||(13343269-13343500)
chr3 (158-330)||(13170148-13170320)
chr3 (10-194)||(13288890-13289076)
chr3 (10-122)||(13170330-13170442)
chr3 (158-232)||(13160248-13160322)
chr3 (10-59)||(13160342-13160391)
chr3 (285-330)||(13332018-13332063)
chr3 (10-54)||(10499944-10499988)
[»] scaffold0002 (4 HSPs)
scaffold0002 (158-330)||(136668-136840)
scaffold0002 (10-122)||(136546-136658)
scaffold0002 (158-232)||(146666-146740)
scaffold0002 (10-59)||(146597-146646)
[»] chr6 (1 HSPs)
chr6 (13-54)||(31680400-31680441)
[»] chr4 (1 HSPs)
chr4 (10-70)||(17853578-17853638)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 13332315 - 13332060
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctattgttaaagtaaaagtagcaaggaatgatgttgtaactaaatcttgaatgaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13332315 agtagcagagagaaaagcccctcccaccaaagttgcagccatcttctattgttaaagtaaaagcagcaaggaatgatgttgtaactaaatcttgaatgaa 13332216  T
Q  110 tttctgaactatgaagatttagaattaggatagttggtagtgtgtatagtaaagagataaggctgaagaaaaatacacggttatgttgtgaatgaataat 209  Q
    |||  ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13332215 ttttagaactatgaagatttagaattgggatagttggcagtgtgtatggtaaagagataaggctgaagaaaaatacagggttatgttgtgaatgaataat 13332116  T
Q  210 tgaagtattgagaaaagcattgacaaactacagaaaaaagcacaccaatggttaat 265  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13332115 tgaagtattgagaaaagcattgacaaactacagaaaaaaacacaccaatggttaat 13332060  T

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Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 13343500 - 13343269
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctattgttaaagtaaaagtagcaaggaatgatgttgtaactaaat--------ct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        ||    
T  13343500 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctattgttaaagtaaa-gtagcaaggaatgatgttgtaactaaatgtctaaatct 13343402  T
Q  102 tgaatgaatttctgaactatgaagatttagaattaggatagttggtagtgtgtata--gtaaagagataaggctgaagaaaaatacacggttatgttgtg 199  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  ||||||||||||||||||||||||||| ||||||||||||||    
T  13343401 tgaatgaatttctgaactatgaagatttagaataaggatagttggtagcgtgtatatagtaaagagataaggctgaagaaaaataaacggttatgttgtg 13343302  T
Q  200 aatgaataattgaagtattgagaaaagcattga 232  Q
    ||||||||||||||||| |||||||||||||||    
T  13343301 aatgaataattgaagtactgagaaaagcattga 13343269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 13170320 - 13170148
Alignment:
Q  158 gtaaagagataaggctgaagaaaaatacacggttatgttgtgaatgaataattgaagtattgagaaaagcattgacaaactacagaaaaaagcacaccaa 257  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  13170320 gtaaagagataaggcttaataaaaatacacggttatgttgtgaatgaataactaaagtattgagaaaagcattgacaaactacagaaaaaagcacaccaa 13170221  T
Q  258 tggttaatggacacacatctggcaaaataattgatataaagaaaagaaaacaataaagcaaaagagaggattc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13170220 tggttaatggacacacatctggcaaaataattgatataaagaaaagaaaacaataaagcaaaagagaggattc 13170148  T

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Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 13289076 - 13288890
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctattgttaaagtaaaagtagcaaggaatgatgttgtaactaaatcttgaatgaa 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  13289076 agtagcagagagaaaagctcctcccaccaaagttgcagccattttctattgttaaagtaaaagcagcaaggaatgaagttgtaactaaatcttgaatgaa 13288977  T
Q  110 tttctgaactatgaagatttagaattaggatagttggta--gtgtgtatagtaaagagataaggctgaagaaaaatacacggttatg 194  Q
    |||  ||||||||||||||||||||| |||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||    
T  13288976 ttttagaactatgaagatttagaattgggatagttggcagtgtgtgtatggtaaagagataaggctgaagaaaaatacacggttatg 13288890  T

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Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 13170442 - 13170330
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctattgttaaagtaaaagtagcaaggaatgatgttgtaactaaatcttgaatgaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  13170442 agtagcagagagaaaagcccctcccaccaaagttgcagccatcttctattgttaaagtaaaagcagcaaggaatgaagttgtaactaaatcttgaatgaa 13170343  T
Q  110 tttctgaactatg 122  Q
    |||  ||||||||    
T  13170342 ttttagaactatg 13170330  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 13160322 - 13160248
Alignment:
Q  158 gtaaagagataaggctgaagaaaaatacacggttatgttgtgaatgaataattgaagtattgagaaaagcattga 232  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13160322 gtaaagagataaggctgaagaaaactacacggttatgttgtgaatgaataattgaagtattgagaaaagcattga 13160248  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 13160391 - 13160342
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctatt 59  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13160391 agtagcagagagaaaagcccctcccaccaaagttgcagccatcttctatt 13160342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 13332063 - 13332018
Alignment:
Q  285 taattgatataaagaaaagaaaacaataaagcaaaagagaggattc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13332063 taattgatataaagaaaagaaaacaataaagcaaaagagaggattc 13332018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 10499988 - 10499944
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccatttt 54  Q
    ||||||||| ||||| || ||||||||||||| ||||||||||||    
T  10499988 agtagcagaaagaaatgcgcctcccaccaaagctgcagccatttt 10499944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 158 - 330
Target Start/End: Original strand, 136668 - 136840
Alignment:
Q  158 gtaaagagataaggctgaagaaaaatacacggttatgttgtgaatgaataattgaagtattgagaaaagcattgacaaactacagaaaaaagcacaccaa 257  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  136668 gtaaagagataaggcttaataaaaatacacggttatgttgtgaatgaataactaaagtattgagaaaagcattgacaaactacagaaaaaagcacaccaa 136767  T
Q  258 tggttaatggacacacatctggcaaaataattgatataaagaaaagaaaacaataaagcaaaagagaggattc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  136768 tggttaatggacacacatctggcaaaataattgatataaagaaaagaaaacaataaagcaaaagagaggattc 136840  T

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Target: scaffold0002; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 136546 - 136658
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctattgttaaagtaaaagtagcaaggaatgatgttgtaactaaatcttgaatgaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  136546 agtagcagagagaaaagcccctcccaccaaagttgcagccatcttctattgttaaagtaaaagcagcaaggaatgaagttgtaactaaatcttgaatgaa 136645  T
Q  110 tttctgaactatg 122  Q
    |||  ||||||||    
T  136646 ttttagaactatg 136658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 146666 - 146740
Alignment:
Q  158 gtaaagagataaggctgaagaaaaatacacggttatgttgtgaatgaataattgaagtattgagaaaagcattga 232  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  146666 gtaaagagataaggctgaagaaaactacacggttatgttgtgaatgaataattgaagtattgagaaaagcattga 146740  T

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Target: scaffold0002; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 146597 - 146646
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctatt 59  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  146597 agtagcagagagaaaagcccctcccaccaaagttgcagccatcttctatt 146646  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 31680400 - 31680441
Alignment:
Q  13 agcagagagaaaagcccctcccaccaaagttgcagccatttt 54  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  31680400 agcagagagaaatgcacctcccaccaaagttgcagccatttt 31680441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 17853578 - 17853638
Alignment:
Q  10 agtagcagagagaaaagcccctcccaccaaagttgcagccattttctattgttaaagtaaa 70  Q
    ||||||||||||||| || ||| ||||||||||||||||||| ||  |||| |||||||||    
T  17853578 agtagcagagagaaatgcacctgccaccaaagttgcagccatatttgattggtaaagtaaa 17853638  T

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