View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7924_low_4 (Length: 315)
Name: NF7924_low_4
Description: NF7924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7924_low_4 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 57164 - 57451
Alignment:
| Q |
18 |
catcaaatccacaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
57164 |
catcaaatccacaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaatgaattgctcataaccgtgcca |
57263 |
T |
|
| Q |
118 |
atatgtatttttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtg |
217 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
57264 |
atatgtattttaatacccgaccaaaccgaggatttaaaataacgcatggagggctgaccgtttgagaaaaatcgcctcttgaataaattagaccactgtg |
57363 |
T |
|
| Q |
218 |
tttcctgtgcaattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
305 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
57364 |
tttcctgtgcaattaaatcccaagataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
57451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 21879309 - 21879596
Alignment:
| Q |
18 |
catcaaatccacaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgcca |
117 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
21879309 |
catcaactccacaagaggaacacctagccaattatcagtccaaaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgcca |
21879408 |
T |
|
| Q |
118 |
atatgtatttttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtg |
217 |
Q |
| |
|
||||| | ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
21879409 |
atatgaagtttaatacccgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcttcttttgaataaattagaccactgtg |
21879508 |
T |
|
| Q |
218 |
tttcctgtgcaattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
305 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21879509 |
tttcccgtgcaattaaatcccaagataatttcagaattaaagcctcgttaatcaagcacgtatgtttgatgtctaacccaccttcatc |
21879596 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 1926116 - 1926403
Alignment:
| Q |
18 |
catcaaatccacaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgcca |
117 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
1926116 |
catcaaatcgacaagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgcca |
1926215 |
T |
|
| Q |
118 |
atatgtatttttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtg |
217 |
Q |
| |
|
||||| | ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || |
|
|
| T |
1926216 |
atatgaagtttaatacccgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgaaaaatatcgcctcttgaataaatgagaccactatg |
1926315 |
T |
|
| Q |
218 |
tttcctgtgcaattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
305 |
Q |
| |
|
||| | ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1926316 |
tttgccgtgcaattaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtagttttgatgtctaacccaccttcatc |
1926403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 21811779 - 21811492
Alignment:
| Q |
18 |
catcaaatccacaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgcca |
117 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
21811779 |
catcaactctacaagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgcca |
21811680 |
T |
|
| Q |
118 |
atatgtatttttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtg |
217 |
Q |
| |
|
||||| | ||| ||| | |||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||| ||||| | || ||||||||||| |
|
|
| T |
21811679 |
atatgaagtttaatacccgaccaaacggatgatttaaaatagtgcatggagggctgaccgtttgagaaatatctccttttgaaaagatgagaccactgtg |
21811580 |
T |
|
| Q |
218 |
tttcctgtgcaattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
305 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21811579 |
tttcccgtgcaattaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtaggcatgaggtctaacccaccttcatc |
21811492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 303
Target Start/End: Original strand, 29304501 - 29304668
Alignment:
| Q |
136 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
235 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| | ||||||||| ||| |||| |||||||| ||||| || || || | |||||||| || |
|
|
| T |
29304501 |
gaccaaaccgaggatttaaaacagcgcttgctaggctgaccatgtgagaaataacgcatcttaaataaattcgaccattgagtatcttttgcaattaaat |
29304600 |
T |
|
| Q |
236 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
303 |
Q |
| |
|
||||| | ||||| ||||| ||||||||||||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
29304601 |
cccaagaaaatttaagaatcaaagcctcgttaatcaaacgcgtaggcttgatatcaaacccaccttca |
29304668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 309
Target Start/End: Original strand, 41345427 - 41345599
Alignment:
| Q |
136 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
235 |
Q |
| |
|
|||||||| |||||||||||||||||| || || ||||| | ||||||||| ||| |||| |||||||| ||||| || || || | |||||||| || |
|
|
| T |
41345427 |
gaccaaactgaggatttaaaatagcgcttgctagg-tgaccatgtgagaaataacgcatcttaaataaattcgaccattgagtatcttttgcaattaaat |
41345525 |
T |
|
| Q |
236 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatctcac |
309 |
Q |
| |
|
||||| | ||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||||||||| ||||| |
|
|
| T |
41345526 |
cccaagacaatttaagaatcaaagcttcgttaatcaaccgcgtaggcttgatatcaaacccaccttcagctcac |
41345599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 21030 - 21317
Alignment:
| Q |
18 |
catcaaatccacaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgcca |
117 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
21030 |
catcaactctacaagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgcca |
21129 |
T |
|
| Q |
118 |
atatgtatttttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtg |
217 |
Q |
| |
|
||||| | ||| ||| | |||||||| || |||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| |||| |||||||| || |
|
|
| T |
21130 |
atatgaagtttaatacccgaccaaacagaagatttaaaatagagcatggagggctgaccgtttgaaaaatatcacctattgaaaaaatgagaccactatg |
21229 |
T |
|
| Q |
218 |
tttcctgtgcaattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
305 |
Q |
| |
|
||| | ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21230 |
tttaccgtgcaattaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtagaaatgaagtctaacccaccttcatc |
21317 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 14637 - 14350
Alignment:
| Q |
18 |
catcaaatccacaagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgcca |
117 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||| ||| |||| |||||||||| |
|
|
| T |
14637 |
catcaaatccacaagaggatcatctaaccaattatcagtccagaaattaatattatttccatctccaacaatccacaaagaattgctcaaaaccgtgcca |
14538 |
T |
|
| Q |
118 |
atatgtatttttatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtg |
217 |
Q |
| |
|
|||| || ||| || | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
14537 |
atatatactttaatgcccgaccaaaccgaggatttaaaatagcgcatggagggccgaccatttgagaaataaagctgcttgaataaactagaccactgtg |
14438 |
T |
|
| Q |
218 |
tttcctgtgcaattatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
305 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
14437 |
tttcctgtgcaattaaatcccaagataattttagaattaaagcctcattaatcaatcgcgtaggtctgatatctaacccaccttcatc |
14350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 303
Target Start/End: Complemental strand, 10137368 - 10137201
Alignment:
| Q |
136 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
235 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||| ||||||| ||| ||| ||||||| |||||||| ||||| || | |||||||| || |
|
|
| T |
10137368 |
gaccaaaccgaggacttaaaatagcgctttcttggctgaccatttgagagataacgcaatctgaataagttagaccattgtgtatcttctgcaattaaat |
10137269 |
T |
|
| Q |
236 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
303 |
Q |
| |
|
||||||| ||||| | ||| ||||| || |||||||| | |||||||||||||| || |||||||| |
|
|
| T |
10137268 |
cccaaaacaatttaataatcaaagcttcattaatcaaacatgtaggtttgatgtccaaaacaccttca |
10137201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 302
Target Start/End: Complemental strand, 20424952 - 20424785
Alignment:
| Q |
135 |
tgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgt-gcaattat |
233 |
Q |
| |
|
||||||||| || |||||||| ||||||| | |||| ||| ||||||||||| |||||||| || | |||||||| || || || ||| |||| || |
|
|
| T |
20424952 |
tgaccaaacagacgatttaaagtagcgcaagctaggcttaccatttgagaaataacgcctctttaaaaggttagaccattgagtatc-tgtagcaagtaa |
20424854 |
T |
|
| Q |
234 |
atcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttc |
302 |
Q |
| |
|
||||||| | |||| ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
20424853 |
atcccaagaatatttaagaatcaaagcttcgttaatcaaacgcgtaggcttgatatccaacccaccttc |
20424785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 303
Target Start/End: Original strand, 10609885 - 10610054
Alignment:
| Q |
134 |
ctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgt-gcaatta |
232 |
Q |
| |
|
||||||||||||| || |||||||| |||| | |||| ||| |||| |||||| |||||||| || | |||||||| || || | |||| ||||||| |
|
|
| T |
10609885 |
ctgaccaaaccgaagacttaaaataacgcaagctaggcttaccatttgggaaataacgcctctttaaaaggttagaccattgagtat-ctgtagcaatta |
10609983 |
T |
|
| Q |
233 |
tatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
303 |
Q |
| |
|
||||||| | ||||| | ||| ||||| ||||||| ||| |||||||| ||||| || | |||||||||| |
|
|
| T |
10609984 |
aatcccaagacaatttaataatcaaagcttcgttaaacaaacgcgtaggcttgatatccagcccaccttca |
10610054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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