View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_high_11 (Length: 434)
Name: NF7926_high_11
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 3211199 - 3210967
Alignment:
| Q |
7 |
tcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaattataagcttgttacttgtgcataaacaaacctaagcatatgtt |
106 |
Q |
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| T |
3211199 |
tcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaat---aagcttgttacttgtgcataaacaaacctaagcatatgtt |
3211103 |
T |
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| Q |
107 |
gttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggactttcaaatcatgatggtacatgattgtcatctgcactt |
206 |
Q |
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| T |
3211102 |
gttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggactttcaaatcatgatggtacatgattgtcatctgcactt |
3211003 |
T |
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| Q |
207 |
gtactaaattgatgcatatatgtctagtagagtact |
242 |
Q |
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| T |
3211002 |
gtactaaattgatgcatatatgtctagtagagtact |
3210967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 213 - 416
Target Start/End: Complemental strand, 3194890 - 3194687
Alignment:
| Q |
213 |
aattgatgcatatatgtctagtagagtactgagttgtaagcagttaagaaaatagtgattaacaatttttggtgaatgagaattataaattctgaacaaa |
312 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3194890 |
aattgatgcatatatgtctagtagagtactaagttgtaagcagttaagaaaatagtgattaacaatttttggtgaatgagaattacaaattctgaacaaa |
3194791 |
T |
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| Q |
313 |
ccaactgatcaatatatatactatgtgcatctgagaatttgtgacaacaaaaacaaatgctcgttttaaactgcatactctactctgtttgttttaccct |
412 |
Q |
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| T |
3194790 |
ccaactgatcaatatatatactatgtgcatctgagaatttgtgacaacaaaaacaaatgctcgttttaaactgcatactctactctgtttgttttaccct |
3194691 |
T |
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| Q |
413 |
ggat |
416 |
Q |
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|||| |
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| T |
3194690 |
ggat |
3194687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 3195194 - 3194990
Alignment:
| Q |
7 |
tcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaattataagcttgttacttgtgcataaacaaacctaagcatatgtt |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3195194 |
tcatcaatcaaacaacatggtagctagtctagtcaaagttgaagtcatcaagctaat---aagcttgttacttgtgcataaacaaacctaagcatatgtt |
3195098 |
T |
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| Q |
107 |
gttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggactttcaaatcatgatggtacatgattgtcatctgcactt |
206 |
Q |
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| T |
3195097 |
gttgctaataacatacatggcttacaatatgagttacaacatacctgatatagatggaggactttcaaatcatgatggtacatgattgtcatctgcactt |
3194998 |
T |
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| Q |
207 |
gtactaaa |
214 |
Q |
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|||||||| |
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| T |
3194997 |
gtactaaa |
3194990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 3205256 - 3205330
Alignment:
| Q |
134 |
tatgagttacaacatacctgatatagatggaggactttcaaatcatgatggtacatgattgtcatctgcacttgt |
208 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3205256 |
tatgagttaaagcatacctgatatagatggaggactttcaaatcatgatggtacatgattgtcatctgcacttgt |
3205330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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