View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_high_12 (Length: 394)
Name: NF7926_high_12
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_high_12 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 5198014 - 5197638
Alignment:
| Q |
1 |
aaatatctttgcttcctaaactgaagctcattgcagtgcaagcaccttataatggtgccatgatgttgtcggtatttggagggcatggtctaacaattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5198014 |
aaatatctttgcttcctaaactgaagctcattgcagtgcaagcaccttataatggtgccatgatgttgtcggtatttggagggcatggtctaacaattga |
5197915 |
T |
|
| Q |
101 |
tgtatatagaagaccttcacacggtctaaagacatggatctaatgattgcttatgtcaaacacattacatttatgcttaaaatgtgtttggatctgttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5197914 |
tgtatatagaagaccttcacacggtctaaagacatggatctaatgattgcttatgtcaaacacattacatttatgcttaaaatgtgtttggatctgttct |
5197815 |
T |
|
| Q |
201 |
gagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataagattgattttaactagaataaatattgatcaacatatttgagaaaaagaagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5197814 |
gagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataagattgattttaactagaataaatattgatcaacataattgagaaaaagaagaa |
5197715 |
T |
|
| Q |
301 |
ccgtttgaatatcgtcatggtactatcaacttaatgtaataatagcaatgaacaagaaggtaacctagcacacaagg |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5197714 |
ccgtttgaatatcgtcatggtactatcaacttaatgtaataatagcaatgaacaagaaggtaacctagcacacaagg |
5197638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 158 - 377
Target Start/End: Original strand, 5175687 - 5175908
Alignment:
| Q |
158 |
aaacacattacatttatgcttaaaatgtgtttggatctgttct--gagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataagattgatt |
255 |
Q |
| |
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||||||||| |||||||| |||||||||||| |||||||||| |||||| |||||||| ||||| | ||||||||||||| ||||| |||||||||| |
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|
| T |
5175687 |
aaacacatttcatttatggttaaaatgtgttacgatctgttctttgagtaataatgaatttctaaaaactggacaaaattgagcaaacagaagattgatt |
5175786 |
T |
|
| Q |
256 |
ttaactagaataaatattgatcaacatatttgagaaaaagaagaaccgtttgaatatcgtcatggtactatcaacttaatgtaataatagcaatgaacaa |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| || ||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5175787 |
ttaactagaataaatattgatcaacataattgagaaaaggaagaattcttcaaatatcgatatggtactatcaacttaatgtaataataagaatgaacaa |
5175886 |
T |
|
| Q |
356 |
gaaggtaacctagcacacaagg |
377 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
5175887 |
gaaggtaacctagcacacaagg |
5175908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 366
Target Start/End: Complemental strand, 1796495 - 1796390
Alignment:
| Q |
264 |
aataaatattgatcaacatatttgagaaaaagaagaaccgtttgaatatcgtcatggtactatcaacttaatgtaat---aatagcaatgaacaagaagg |
360 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
1796495 |
aataaatattgatcaacataattgagaaaaagaagatttctttaaatatcgacatggtactatcaacttaatgtaataataataggaatgaacaagaagg |
1796396 |
T |
|
| Q |
361 |
taacct |
366 |
Q |
| |
|
|||||| |
|
|
| T |
1796395 |
taacct |
1796390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 5199500 - 5199398
Alignment:
| Q |
154 |
tgtcaaacacattacatttatgcttaaaatgtgtttggatctgttct--gagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataagatt |
251 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||| ||||||||| ||||||||||| |||||| |
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|
| T |
5199500 |
tgtcatacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaagatt |
5199401 |
T |
|
| Q |
252 |
gat |
254 |
Q |
| |
|
||| |
|
|
| T |
5199400 |
gat |
5199398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 5184261 - 5184372
Alignment:
| Q |
152 |
tatgtcaaacacattacatttatgcttaaaatgtgtttggatctgttc--tgagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataaga |
249 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||| ||||||| ||||| | | |
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|
| T |
5184261 |
tatgtcaaacacatttcatttatggttaaaatgtgttacgatctgttctttgagtaagaatgaattgctaaaaacaggacagaattgaggaaaca-gata |
5184359 |
T |
|
| Q |
250 |
ttgattttaacta |
262 |
Q |
| |
|
||||||||||||| |
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|
| T |
5184360 |
ttgattttaacta |
5184372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 5194544 - 5194647
Alignment:
| Q |
151 |
ttatgtcaaacacattacatttatgcttaaaatgtgtttggatctgttc--tgagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataag |
248 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| ||| | || ||||||||||| | ||| ||||| ||||||||| ||||||||||| ||| |
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|
| T |
5194544 |
ttatatcaaacacatttcatttatgcttaaaatgtgtttgaatcgggtctttgagtaagaattatttgctaaaaacaggacaaagttgagtaaacaaaag |
5194643 |
T |
|
| Q |
249 |
attg |
252 |
Q |
| |
|
|||| |
|
|
| T |
5194644 |
attg |
5194647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 1796720 - 1796666
Alignment:
| Q |
218 |
taaaatcaggacaaaattgagtaaacataagattgattttaactagaataaatat |
272 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1796720 |
taaaaacagtacaaaattgagtaaacaaaagattgattttaactagaataaatat |
1796666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 5186787 - 5186838
Alignment:
| Q |
315 |
tcatggtactatcaacttaatgtaataatagcaatgaacaagaaggtaacct |
366 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
5186787 |
tcatggcactatcaactgaatgtaataataggaatgaacaagaaggtaacct |
5186838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 288
Target Start/End: Original strand, 5204845 - 5204969
Alignment:
| Q |
157 |
caaacacattacatttatgcttaaaatgtgtttggatctgttctgagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataagattgattt |
256 |
Q |
| |
|
|||||||||| |||||||| || ||||||||| ||||| |||||||||||| ||||| ||||| ||||||| ||||||||||| |||| ||||| |
|
|
| T |
5204845 |
caaacacattgcatttatgtttgaaatgtgttaggatcc--tctgagtaagaaagaattcctaaaaattggacaaa-ttgagtaaacaaaagaatgatt- |
5204940 |
T |
|
| Q |
257 |
taactagaataaatattgatcaacatatttga |
288 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |
|
|
| T |
5204941 |
---ctagaataaagattgatcaacataattga |
5204969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 6231171 - 6231223
Alignment:
| Q |
304 |
tttgaatatcgtcatggtactatcaacttaatgtaataatagcaatgaacaag |
356 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| |||| |||| ||||| |
|
|
| T |
6231171 |
tttgaatattgtcatggtactatcaactgaatgtaattataggaatggacaag |
6231223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 5184385 - 5184441
Alignment:
| Q |
304 |
tttgaatatcgtcatggtactatcaacttaatgtaataatagcaatgaacaagaagg |
360 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||| |||| |||| ||||||||| |
|
|
| T |
5184385 |
tttgaatatcatcatggtactataaacggaatgtaattataggaatggacaagaagg |
5184441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 151 - 369
Target Start/End: Original strand, 5178165 - 5178388
Alignment:
| Q |
151 |
ttatgtcaaacacattacatttatgcttaaaatgtgtttggatctgttct--gagtaagaatgaa-ttggtaaaatcaggacaaaattgagtaaacataa |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||| ||| ||||| |||||||||||||| ||||| || |
|
|
| T |
5178165 |
ttatgtcaaacacatttcatttatgcttaaaatgtgtttggatctgttatttgcgtaagaatgaaattgttaaaaacaggacaaaattgaataaacgaaa |
5178264 |
T |
|
| Q |
248 |
gattgattttaactagaataaatattgatcaacatatttgagaaaaagaagaaccgtttgaatatcgtcatgg--tactatcaacttaatgtaataatag |
345 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| || |||||||||| || |||||||||||||||||||||| |
|
|
| T |
5178265 |
gattgattttaactagagtaaatattgatcaacataattgagaaaaagaagaattctttaaacatcgtcatggtatattatcaacttaatgtaataatag |
5178364 |
T |
|
| Q |
346 |
caatgaacaagaaggtaacctagc |
369 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5178365 |
gaatgaacaagaaggtaacctagc |
5178388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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