View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7926_high_13 (Length: 387)
Name: NF7926_high_13
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 42351665 - 42351294
Alignment:
| Q |
1 |
gcaaaaaacaatctgatatatcaatatgtcaagtaagtaaagttatgtagctagagaattatggattctttacctctttccatctctagcaggatcagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42351665 |
gcaaaaaacaatctgatatatcaatttgtcaagtaattaaagttaggtagctagagaattatggattctttacctctttccatctctagcaggatcagaa |
42351566 |
T |
|
| Q |
101 |
aataagcaatccttggttggtcttcctggaagtttagctcttaatatagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtgtccgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42351565 |
aataagcaatccttggttggtcttcctggaagtttagctcttaatatagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtgtccgg |
42351466 |
T |
|
| Q |
201 |
gcttgtcactgcacatcatctatctaattcagttacgagtgtaatattnnnnnnnntaagatttaagaatatgcaatatcagcataaaattgttttaaac |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42351465 |
gcttgtcactgtacatcatctatctaattcagttacgagtgtaatattaaaaaaaataagatttaagaatatgcaatatcagcgtaaaattgttttaaac |
42351366 |
T |
|
| Q |
301 |
cgacaatcaatcataacttgctaagacaacaaacaattacatgactgctttttagctaaaagagaataagtt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42351365 |
cgacaatcaatcataacttgctaagacaacaaacaattacatgactgctttttagctaaaagagaataagtt |
42351294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 27559255 - 27559458
Alignment:
| Q |
1 |
gcaaaaaacaatctgatatatcaatatgtcaagtaagtaaagttatgtagctagagaattatggattctttacctctttccatctctagcaggatcagaa |
100 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27559255 |
gcaaagaacaattcgatatatcaatttgtcaagtaagtaaagttaggtagctagataattatggattctttacctctttccatctctagcaggatcagaa |
27559354 |
T |
|
| Q |
101 |
aataagcaatccttggttggtcttcctggaagtttagctcttaatatagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtgtccgg |
200 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
27559355 |
aataagcaatcctttgttggtcttcctagaagtttagctcttaatgtagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtttcccg |
27559454 |
T |
|
| Q |
201 |
gctt |
204 |
Q |
| |
|
|||| |
|
|
| T |
27559455 |
gctt |
27559458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 23989598 - 23989649
Alignment:
| Q |
285 |
taaaattgttttaaaccgacaatcaatcataacttgctaagacaacaaacaa |
336 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
23989598 |
taaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaa |
23989649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 23982916 - 23982967
Alignment:
| Q |
285 |
taaaattgttttaaaccgacaatcaatcataacttgctaagacaacaaacaa |
336 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
23982916 |
taaaatggttttacaccgacaatcaatcacaacttgctaagaaaacaaacaa |
23982967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University