View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_high_15 (Length: 247)
Name: NF7926_high_15
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 4916974 - 4916760
Alignment:
| Q |
9 |
attttagtgatacatgttattatacctaacttctaatcaaaattaattttctccatcataattatatataccaaaaaagatttatnnnnnnnnnnnnnnn |
108 |
Q |
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| T |
4916974 |
attttagtgatacatgttattatacctaacttctaatcaaaattaattttctccatcataattatatataccaaaaaagatttataaaaaaaaaaa---- |
4916879 |
T |
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| Q |
109 |
nntcgcaatcacaaaaccttgatgtgttcatcaatgacattgaaagcaacataccttcttcaagccaggaataagagcagctagagtaattaagcactga |
208 |
Q |
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| T |
4916878 |
--tcgcaatcacaaaaccttgatgtgttcatcaatgacattgaaagcaacataccttcttcaagccaggaataagagcagctagagtaattaagcactga |
4916781 |
T |
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| Q |
209 |
ctgagtttctctcttctcttt |
229 |
Q |
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||||||||||||||||||||| |
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| T |
4916780 |
ctgagtttctctcttctcttt |
4916760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 4892053 - 4891982
Alignment:
| Q |
158 |
cataccttcttcaagccaggaataagagcagctagagtaattaagcactgactgagtttctctcttctcttt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
4892053 |
cataccttcttcaagccaggaataagagcagctagagcaatcaagcactgactgagtttctctcttctcttt |
4891982 |
T |
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