View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7926_high_18 (Length: 238)
Name: NF7926_high_18
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39274781 - 39275002
Alignment:
| Q |
1 |
ttaaaataaagcacatatttcaataaaatggatccatgtagcataattaacaacacaactattagtatttagtactataatacttttcaagagaatggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39274781 |
ttaaaataaagcacatatttcaataaaatggatccatgtagcataattaacaacacaactattagtatttagtactataatacttttcaagagaatggta |
39274880 |
T |
|
| Q |
101 |
aagggtgatcttatcttattacctgtgtggctttgataacagcaccagcagcaagatgaagagtcatatgactagtaagattgaagggctcagtcaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39274881 |
aagggtgatcttatcttattacctgtgtggctttgataacagcaccagcagcaagatgaagagtcatatgactagtaagattgaagggctcagtcaaata |
39274980 |
T |
|
| Q |
201 |
tacccctggtggtacataaagg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39274981 |
tacccctggtggtacataaagg |
39275002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 16895366 - 16895431
Alignment:
| Q |
121 |
acctgtgtggctttgataacagcaccagcagcaagatgaagagtcatatgactagtaagattgaag |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16895366 |
acctgtgtggctttaataacagcaccagcagcaagataaagagtcatatgactagtaagattgaag |
16895431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University