View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_high_2 (Length: 823)
Name: NF7926_high_2
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 26 - 584
Target Start/End: Original strand, 5621648 - 5622206
Alignment:
| Q |
26 |
atggagcgcgtacaacatttaggtttaaaatcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaactact |
125 |
Q |
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| T |
5621648 |
atggagcgtgtacaacatttaggtataaaatcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaactact |
5621747 |
T |
|
| Q |
126 |
atttctgcagagatattacagtaattagaaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttgagtctgttggtgttgctgttata |
225 |
Q |
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| T |
5621748 |
atttctgctgagatattacagtaattagcaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactttgagtctgttggcgttgctgttata |
5621847 |
T |
|
| Q |
226 |
ttggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgccctggttttctcaaccattaagttgtaatagttattttttctgta |
325 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621848 |
ttggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgccctggttttctcaaccattaagttgtaatagttattttttctgta |
5621947 |
T |
|
| Q |
326 |
gttgtcatactaacgacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatcagtaactattgacaattgtttcctcg |
425 |
Q |
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| T |
5621948 |
gttgtcatactaacaacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatcagtaactattgacaattgtttcctcg |
5622047 |
T |
|
| Q |
426 |
acattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcat |
525 |
Q |
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| T |
5622048 |
acattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatattgttttcgtattttactggatgagagcaactcat |
5622147 |
T |
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| Q |
526 |
ttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagtatgt |
584 |
Q |
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| T |
5622148 |
ttggtgtgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgt |
5622206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 639 - 823
Target Start/End: Original strand, 5638469 - 5638653
Alignment:
| Q |
639 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
738 |
Q |
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| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
5638568 |
T |
|
| Q |
739 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataacctt |
823 |
Q |
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| T |
5638569 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataacctt |
5638653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 577 - 618
Target Start/End: Original strand, 5638407 - 5638448
Alignment:
| Q |
577 |
cagtatgtactaaaaagttctatttgggcgtgggtgtgtata |
618 |
Q |
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| T |
5638407 |
cagtatgtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 432 - 586
Target Start/End: Complemental strand, 30634741 - 30634587
Alignment:
| Q |
432 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
531 |
Q |
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| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
|
| Q |
532 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
586 |
Q |
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| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 674 - 812
Target Start/End: Complemental strand, 30634501 - 30634363
Alignment:
| Q |
674 |
gtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagt |
773 |
Q |
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| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagt |
30634402 |
T |
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| Q |
774 |
tatagatcaccaagtatggtagtgtcatatgtgatactg |
812 |
Q |
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| T |
30634401 |
tatagatcaccaggtatggtagtgtcatttgtaatactg |
30634363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 432 - 586
Target Start/End: Complemental strand, 21423527 - 21423373
Alignment:
| Q |
432 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
531 |
Q |
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| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
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| Q |
532 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
586 |
Q |
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| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 680 - 801
Target Start/End: Complemental strand, 21423281 - 21423160
Alignment:
| Q |
680 |
gtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttataga |
779 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21423281 |
gtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttataga |
21423182 |
T |
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| Q |
780 |
tcaccaagtatggtagtgtcat |
801 |
Q |
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|||||| ||||||||||||||| |
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| T |
21423181 |
tcaccaggtatggtagtgtcat |
21423160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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