View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_high_9 (Length: 464)
Name: NF7926_high_9
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 100 - 452
Target Start/End: Original strand, 4917045 - 4917397
Alignment:
| Q |
100 |
atttatagaagttttgaattttataaatttgtaacatttaattaaacttgcttctattgtaaatcaaatctatagatggacaaggcttcagtcatagggg |
199 |
Q |
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| T |
4917045 |
atttatagaagttttgaattttataaatttgtaacatttaattaaacttgcttctattgtaaatcaaatctatagatggacaaggcttcagtcatagggg |
4917144 |
T |
|
| Q |
200 |
atgctatcaagcatgtaaaagagctccaagaacgtttgagagtattagaagaacaaaacaagaatagtcctattgagtttgtagggacgcttaacaaacc |
299 |
Q |
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| T |
4917145 |
atgctatcaagcatgtaaaagagctccaagaacgtttgagagtattagaagaacaaaacaagaatagtcctattgagtttgtagtgacgcttaacaaacc |
4917244 |
T |
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| Q |
300 |
gaagctaaattatgagtcatggagtgatgatggttctaaggctgctagtgctaataatgaaactctccctcatgttgaagccaaaattttgggcaaagac |
399 |
Q |
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| T |
4917245 |
gaagctaaattatgagtcatggagtgatgatggttctaaggctgctagtgctaataatgaaactctccctcatgtggaagccaaaattttgggcaaagac |
4917344 |
T |
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| Q |
400 |
gttctcataaggatccagtgccaaaaacaaaagagttttttgcttaatatatt |
452 |
Q |
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| T |
4917345 |
gttctcataaggatccagtgccaaaaacaaaagagttttttgcttaatatatt |
4917397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 116 - 448
Target Start/End: Original strand, 4910006 - 4910338
Alignment:
| Q |
116 |
aattttataaatttgtaacatttaattaaacttgcttctattgtaaatcaaatctatagatggacaaggcttcagtcataggggatgctatcaagcatgt |
215 |
Q |
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| T |
4910006 |
aattttaggaatttgtaacatttaattaaacgtgattatgttgtaaatcaaatcaacagacggacaatacttcagtcataggagatgctatcaagcatgt |
4910105 |
T |
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| Q |
216 |
aaaagagctccaagaacgtttgagagtattagaagaacaaaacaagaatagtcctattgagtttgtagggacgcttaacaaaccgaagctaaattatgag |
315 |
Q |
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| T |
4910106 |
gaaagagctccaggaacgtttgagagtattagaagaagagaacaagaatagtcatattgaatctgtagtgacgcttaacaaattgctgctaatttacaag |
4910205 |
T |
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| Q |
316 |
tcatggagtgatgatggttctaaggctgctagtgctaataatgaaactctccctcatgttgaagccaaaattttgggcaaagacgttctcataaggatcc |
415 |
Q |
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| T |
4910206 |
tcatggagtgatgatggttctaaggctgctagtgctaataatgaatctctccctcacgtggatgccaaaattttggacaaaaacgtgctcataaggatcc |
4910305 |
T |
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| Q |
416 |
agtgccaaaaacaaaagagttttttgcttaata |
448 |
Q |
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| T |
4910306 |
agtgccaaaagcaaaagagttatttgcttaata |
4910338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 165 - 432
Target Start/End: Original strand, 4893656 - 4893923
Alignment:
| Q |
165 |
aaatctatagatggacaaggcttcagtcataggggatgctatcaagcatgtaaaagagctccaagaacgtttgagagtattagaagaacaaaacaagaat |
264 |
Q |
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| T |
4893656 |
aaatctacagatggacaaggcttcagtcctaggagatgcaatcaagtacgtgaaagagctccaagaacgtttgagggtattagaggaacaaaacaaaaat |
4893755 |
T |
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| Q |
265 |
agtcctattgagtttgtagggacgcttaacaaaccgaagctaaattatgagtcatggagtgatgatggttctaaggctgctagtgctaataatgaaactc |
364 |
Q |
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| T |
4893756 |
agtcatgttcagtctgtggtgacggttgatgaacaacaactaagttacgactcatcaaacagtgatgactctgaagttgctagtggtaataatgaaactc |
4893855 |
T |
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| Q |
365 |
tccctcatgttgaagccaaaattttgggcaaagacgttctcataaggatccagtgccaaaaacaaaag |
432 |
Q |
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| T |
4893856 |
tcccacatgtagaagccaaagttttggacaaggatgtgctcataaggatccattgccaaaagcaaaag |
4893923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 24637566 - 24637478
Alignment:
| Q |
19 |
atttggttgctttttcatttgtcggaggaatcaagctgttatttcttataatggtgatgattgaaaggcatctgaaacataatttatag |
107 |
Q |
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| T |
24637566 |
atttggttgctttttcatttgtcggaggaatcaagctgttatttcttataatggtgatgattgaaaggcatctgaaacataatttatag |
24637478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 24716194 - 24716115
Alignment:
| Q |
19 |
atttggttgctttttcatttgtcggaggaatcaagctgttatttcttataatggtgatgattgaaaggcatctgaaacataattt |
103 |
Q |
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| T |
24716194 |
atttggttgctttttcatatataggaggaatcaatctgttatttcctataa-----atgattgaaaggaatctgaaacataattt |
24716115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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