View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_1 (Length: 485)
Name: NF7926_low_1
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 290 - 471
Target Start/End: Original strand, 40576308 - 40576489
Alignment:
| Q |
290 |
aatggcgctatcccttcatcgaattcccagtagtagttgttgttccattccatttattaatgcaaagccgcaatatcttccttctaaaaccctacgcaag |
389 |
Q |
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| T |
40576308 |
aatggcgctaccccttcttcgaattcccagtagtagttgttgttccattccatttattaatacaaagccacaatatcttccttctaaaaccctccgcaag |
40576407 |
T |
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| Q |
390 |
tcgacggtggcagcagcgacggagcttcaaacgccggttagactaactgaagcaaacgattaccggtatccgagtggtgatg |
471 |
Q |
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| T |
40576408 |
tcgacggtggcagcagcgacggagcttcaaacgccggtgagactaactgaagcaaacgattaccggtatcctagtggcgatg |
40576489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 40576153 - 40576273
Alignment:
| Q |
147 |
agagtccttgggggagttttgacgatcgtacacgtgtcaagcagcaattggaaaagaatctaacggttggtttagctcgctcttgttatcccgtaaatta |
246 |
Q |
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| T |
40576153 |
agagtccttgggggagttttgacgatcgtacacgtgtcaagcagcaattggaaaagaatctaacggttggtttagctcgctcttattatcccgtaagtta |
40576252 |
T |
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| Q |
247 |
cgtgcgtgtcagcaagcactt |
267 |
Q |
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| T |
40576253 |
cgtgcgtgtcagcaagcactt |
40576273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 40576029 - 40576130
Alignment:
| Q |
36 |
tcaacattaattattaattattccataaattnnnnnnnttattttttcttacaagggtgtat-------accagagacttaaaaaaaagtctttccttgt |
128 |
Q |
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| T |
40576029 |
tcaacattaattattaattattccataaattaaaaatatta-tttttcttacaagggagtatcaacttagccagagacttacaaaaaagtctttccttgt |
40576127 |
T |
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| Q |
129 |
caa |
131 |
Q |
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||| |
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| T |
40576128 |
caa |
40576130 |
T |
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