View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_10 (Length: 442)
Name: NF7926_low_10
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 392380 - 392772
Alignment:
| Q |
16 |
atataggttacatatataaataaatataaatgtatgcaacttcagttaaacaaaatgaggctgtaggcccgcttctgaaacttctggtttgagccgctaa |
115 |
Q |
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| T |
392380 |
atataggttacatatataaataaatataaacgtatgcaacttcagttaaacaaaatgaggctgtaggcccgcttttgaaacttctggtttgagctgctaa |
392479 |
T |
|
| Q |
116 |
cgagcatcgataagctgtcgcaagcaatcaaagcgattcccttccttattctaatagaaaaggtaatccgggccctctccttgtctacagctatgctatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392480 |
cgagcatcgataagctgtcgcaagcaatcaaagcgattcccttccttattctaatagaaaaggtaatccgggccctctccttgtctacagctatgctatc |
392579 |
T |
|
| Q |
216 |
tctatcactgagattatttgatgtttcatgacttaatttaaccacaataaacacattgactaaattggaagtaacatttgtaattctcaataacataatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392580 |
tctatcactgagattatttgatgtttcatgacttaatttaaccacaataaacacattgactaaattggaagtaacatttgtaattctcaataacataatt |
392679 |
T |
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| Q |
316 |
gaacatatcctataattaaaatttagaataaaaccaatcaatctgaatatcaaaatctgtcttctttaataaacgagtagatcccttcaaaat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
392680 |
gaacatatcctataattaaaatttagaataaaaccaatcaaactaaatatcaaaatctgtcttctttaataaacgagtagatcccttcaaaat |
392772 |
T |
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