View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_15 (Length: 329)
Name: NF7926_low_15
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_15 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 52524144 - 52524257
Alignment:
| Q |
124 |
ctacaaaaagatacaaaaacatatcttgatttggtgcttttgaacaattgagtttatcaaaaggaatataacattggatctttcattgaaacaatctagc |
223 |
Q |
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| T |
52524144 |
ctacaaaaagatacaaaaacatatcttgatttggtgcttatgaacaattgagtttatcaaagggaatgcaacattggatctttcattgaaatattctagc |
52524243 |
T |
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| Q |
224 |
aacatcctctttta |
237 |
Q |
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| T |
52524244 |
aacttcctctttta |
52524257 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 31236365 - 31236426
Alignment:
| Q |
124 |
ctacaaaaagatacaaaaacatatcttgatttggtgcttttgaacaattgagtttatcaaaag |
186 |
Q |
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| T |
31236365 |
ctacaaaaagatactaca-catatattgatttggtgcttctgaacaattgagtttatcaaaag |
31236426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 16134146 - 16134081
Alignment:
| Q |
45 |
ttctaaaaattacttaaggaaacttgttgaatgtattgatttcctacaaaagttcagaagcaatgta |
111 |
Q |
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| T |
16134146 |
ttctaaaaattacttaacgaaacttgttccg-gttttgatttcctacaaaagttcagaagcaatgta |
16134081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 19257 - 19204
Alignment:
| Q |
143 |
catatcttgatttggtgcttttgaacaattgagtttatcaaaaggaatataaca |
196 |
Q |
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| T |
19257 |
catatattgatttggtgcttctgaacaattgagtttatcataagcaatgtaaca |
19204 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 19840586 - 19840528
Alignment:
| Q |
143 |
catatcttgatttggtgcttttgaacaattgagtttatcaaaaggaatataacattgga |
201 |
Q |
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| T |
19840586 |
catatattgatttggtgcttctgaacaattgagtttataacaagcaatgtaacaatgga |
19840528 |
T |
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