View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7926_low_19 (Length: 239)

Name: NF7926_low_19
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7926_low_19
NF7926_low_19
[»] chr7 (3 HSPs)
chr7 (5-222)||(45631127-45631344)
chr7 (150-192)||(41275148-41275190)
chr7 (5-34)||(37309061-37309090)
[»] chr5 (1 HSPs)
chr5 (67-222)||(39852202-39852349)
[»] chr6 (1 HSPs)
chr6 (125-220)||(8541543-8541638)
[»] scaffold1606 (1 HSPs)
scaffold1606 (24-101)||(1500-1577)
[»] chr8 (1 HSPs)
chr8 (71-164)||(40597747-40597840)
[»] chr2 (1 HSPs)
chr2 (73-193)||(38262583-38262703)
[»] chr1 (1 HSPs)
chr1 (71-169)||(42541877-42541975)
[»] chr4 (1 HSPs)
chr4 (150-192)||(5577804-5577846)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 45631344 - 45631127
Alignment:
Q  5 tgtgaataattgtttttcaaattgatatggccgtgaaattactctgaaaaacgttgttaccggcatggtagacaaaatcgcgatctgactcgtaaaaacg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45631344 tgtgaataattgtttttcaaattgatatggccgtgaaattactgtgaaaaacgttgttaccggcatggtagacaaaatcgcgatctgactcgtaaaaacg 45631245  T
Q  105 taagactctacgatcttgagtaccacctgcgttcttgattgggtatggaatcggaaattggtgggtgcggccaggatcgccgcgaaaacgcgtggaaacg 204  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45631244 taagagtctacgatcttgagtaccacctgcgtgcttgattgggtatggaatcggaaattggtgggtgcggtcaggatcgccgcgaaaacgcgtggaaacg 45631145  T
Q  205 actgtctcgtgcgtttcg 222  Q
    ||||||||||||||||||    
T  45631144 actgtctcgtgcgtttcg 45631127  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 41275190 - 41275148
Alignment:
Q  150 tggaatcggaaattggtgggtgcggccaggatcgccgcgaaaa 192  Q
    ||||||||||| |||||||| || |||||||||||||||||||    
T  41275190 tggaatcggaatttggtgggcgcagccaggatcgccgcgaaaa 41275148  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 37309061 - 37309090
Alignment:
Q  5 tgtgaataattgtttttcaaattgatatgg 34  Q
    ||||||||||||||||||||||||||||||    
T  37309061 tgtgaataattgtttttcaaattgatatgg 37309090  T

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Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 39852349 - 39852202
Alignment:
Q  67 gcatggtagacaaaatcgcgatctgactcgtaaaaacgtaagactctacgatcttgagtaccacctgcgttcttgattgggtatggaatcggaaattggt 166  Q
    |||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39852349 gcatggtagacaaaatcgcgatctgactcgtaa--------gagtctacgatcttgagtaccacctgcgtgcttgattgggtatggaatcggaaattggt 39852258  T
Q  167 gggtgcggccaggatcgccgcgaaaacgcgtggaaacgactgtctcgtgcgtttcg 222  Q
    ||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  39852257 gggcgcggccagaatcgccgtgaaaacgcgaggaaacgactgtctcgtgcgtttcg 39852202  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 8541543 - 8541638
Alignment:
Q  125 taccacctgcgttcttgattgggtatggaatcggaaattggtgggtgcggccaggatcgccgcgaaaacgcgtggaaacgactgtctcgtgcgttt 220  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8541543 taccacctgcgtgcttgattgggtatggaatcggaaattggtgggcgcggccaggatcgccgcgaaaacgcgtggaaacgactgtctcgtgcgttt 8541638  T

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Target: scaffold1606 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold1606
Description:

Target: scaffold1606; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 1500 - 1577
Alignment:
Q  24 aattgatatggccgtgaaattactctgaaaaacgttgttaccggcatggtagacaaaatcgcgatctgactcgtaaaa 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1500 aattgatatggccgtgaaattactgtgaaaaacgttgttaccggcatggtagacaaaatcgcgatctgactcgtaaaa 1577  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 40597840 - 40597747
Alignment:
Q  71 ggtagacaaaatcgcgatctgactcgtaaaaacgtaagactctacgatcttgagtaccacctgcgttcttgattgggtatggaatcggaaattg 164  Q
    ||||||||||||||| ||||||||||||||||||  ||| | ||||||||||||||||| |||||| ||||||||||| |||||| ||||||||    
T  40597840 ggtagacaaaatcgcaatctgactcgtaaaaacgcgagagtatacgatcttgagtaccatctgcgtccttgattgggtttggaattggaaattg 40597747  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 38262583 - 38262703
Alignment:
Q  73 tagacaaaatcgcgatctgactcgtaaaaacgtaagactctacgatcttgagtaccacctgcgttcttgattgggtatggaatcggaaattggtgggtgc 172  Q
    |||||||||| |||||||||| |||||||||  |||| || | ||||||||||||||  || || ||||| | |||  |||||||||||||||||||  |    
T  38262583 tagacaaaattgcgatctgacacgtaaaaacacaagagtcaatgatcttgagtaccatttgtgtgcttgaataggtcaggaatcggaaattggtgggcac 38262682  T
Q  173 ggccaggatcgccgcgaaaac 193  Q
    |||| ||||| ||||||||||    
T  38262683 ggccgggatctccgcgaaaac 38262703  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 42541975 - 42541877
Alignment:
Q  71 ggtagacaaaatcgcgatctgactcgtaaaaacgtaagactctacgatcttgagtaccacctgcgttcttgattgggtatggaatcggaaattggtggg 169  Q
    ||||||||| ||| |||||||||||||| ||| | | || ||||||||||||||||||| ||| || ||||| | |||   ||||||||||||| ||||    
T  42541975 ggtagacaagatcacgatctgactcgtagaaatgcacgagtctacgatcttgagtaccatctgtgtgcttgagtaggtccagaatcggaaattgttggg 42541877  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 5577846 - 5577804
Alignment:
Q  150 tggaatcggaaattggtgggtgcggccaggatcgccgcgaaaa 192  Q
    ||||||||||| ||||| || ||||||||||||||||||||||    
T  5577846 tggaatcggaatttggtaggcgcggccaggatcgccgcgaaaa 5577804  T

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