View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_2 (Length: 291)
Name: NF7926_low_2
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 12268388 - 12268661
Alignment:
| Q |
1 |
cgagctcaaaatcaacagcactccatttttgcttctgggtttcgatcacaattgagtgaggagaagaaggtggaagtgagagaaatttaaagagttagaa |
100 |
Q |
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| T |
12268388 |
cgagctcaaaattaatagcactccatttttgcttctggggttcgatcacaatcgagtgagaagaagaaggtggaagtgagagaaatttaaagagttagaa |
12268487 |
T |
|
| Q |
101 |
aattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacttacaaagtatgaaacacattttggaaatgttacaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12268488 |
aattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacgtacaaagtatgaaacacattttggaaatgttacaaaat |
12268587 |
T |
|
| Q |
201 |
caccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagta |
274 |
Q |
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| T |
12268588 |
caccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagta |
12268661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
80 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
160 |
Q |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
80 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
160 |
Q |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
98 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
151 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
98 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
151 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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