View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_3 (Length: 786)
Name: NF7926_low_3
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 217 - 776
Target Start/End: Complemental strand, 25427452 - 25426872
Alignment:
| Q |
217 |
tgaaattaattgaatgattgaaatggcgatgtagatttgcggaataatttagtaccatgaatgatataaatataattaacaggctgtatagtgttgtaga |
316 |
Q |
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| T |
25427452 |
tgaaattaattgaatgattgaaatggcgatgtagatttgccgaataatttagtaccatgattgatataaatataattaacaggctgtatagtgttgtaga |
25427353 |
T |
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| Q |
317 |
tttaaaggatatttactgcatgtgtaaattagtgttaatcagttttacactcgtattcaatactaatgtgtaaat---------------------tcga |
395 |
Q |
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| T |
25427352 |
tttaaaggatatttactgcatgtgtaaattagtattaatcagttttacacttgtattcaatactaatgtgcaaatcagttttacacttgtattatttcga |
25427253 |
T |
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| Q |
396 |
tagatgatcgttttaaaatttgtaatttgattgccatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttat |
495 |
Q |
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| T |
25427252 |
tagatgatcgttttaaaatttgtaatttgattgacatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttat |
25427153 |
T |
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| Q |
496 |
actctagtgaaaatgttttgaaggattttacagatgtttagtgtatgtgtaaatcaatgttaattacgattacacttacatccaataactatcctgagtt |
595 |
Q |
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| T |
25427152 |
actctagtgaaaatgttttgaaggattttacagatgtttagtgtatgtataaatcaatgttaattacgattacacttacatccaataactatcctgagtt |
25427053 |
T |
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| Q |
596 |
ttgatacatcaaccctcttttgtaattgcattttaaaattggtgtaatggttttaaaagaatggaggactcattgaattgtaagagtaaaattgatttac |
695 |
Q |
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| T |
25427052 |
ttgatacatcaaccctcttttgtaattgcattttaaaattggtgtaatggttttaaaagaatggaggactcgttgaatgttaagagtaaaattgatttac |
25426953 |
T |
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| Q |
696 |
atttaccattaatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatgcattgatgatgatg |
776 |
Q |
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| T |
25426952 |
atttaccattaatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatgcattgatgttgatg |
25426872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 25427651 - 25427494
Alignment:
| Q |
18 |
gtgtcgtgaggaagagcaaaatgtggtgttggggttttgtaaaggatgtgttgagcatgaaaaagctgggagtctttatatatgtggctgtcctggaact |
117 |
Q |
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| T |
25427651 |
gtgtcgtgaggaagagcaaaatgtggtgttggggttttgtaaagggtgtgttgagcatgaaaaagctgggagtctttatatatgtggctgtcctggtact |
25427552 |
T |
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| Q |
118 |
gggaaatcgttgtcgatggagaaagtgaaagtgaatttgctcaattgggctgcagagg |
175 |
Q |
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| T |
25427551 |
gggaaatcgttgtcgatggagaaagtgaaagtgaatttactcaattgggctgcagagg |
25427494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 25426943 - 25426848
Alignment:
| Q |
418 |
taatttgattgccatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttatactctagtgaaaatgtttt |
514 |
Q |
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| T |
25426943 |
taatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatg-cattgatgttgatggttattctctagtgaaagtgtttt |
25426848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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