View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_6 (Length: 578)
Name: NF7926_low_6
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 9 - 560
Target Start/End: Original strand, 43483437 - 43483988
Alignment:
| Q |
9 |
acatcatcactaactaatatgcatgaaacagttagggaacaatattatatcaatatattagattaataggaagcagataatgatgataggaaaactaaga |
108 |
Q |
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| T |
43483437 |
acattatcactaactaatatgcatggaacagttagggaacaatattatatcaatatattagattaataggaagcagataatgatgataggaaaactaaga |
43483536 |
T |
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| Q |
109 |
tggctcaaatacacgtatatatacattataggttgacattaattcatatatagcgatcatataannnnnnnattatcatttcagaaaaatataaatggca |
208 |
Q |
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| T |
43483537 |
tggctcaaatacacgtatatatacattataggttgacattaattcatatatagcgatcatataatttttttattatcatttcagaaaaatataaatggca |
43483636 |
T |
|
| Q |
209 |
atcgatttcaaaccagacaaaaatgatgttgaccctgcatggaccattagggtcatatacaatttaccaccatgatctattaatatacggacccaataat |
308 |
Q |
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| T |
43483637 |
atcgatttcaaaccagacaaaaatgatgttgaccctgcatggaccattagggtcatatacaatttaccaccatgatctattaatatacggacccaataat |
43483736 |
T |
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| Q |
309 |
tcatgacagttaacttaggtagctagaaactgccaaaatgtgtctatatataggacctaaattaacatatccatatggtatattcagaaaaagagcaaat |
408 |
Q |
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| T |
43483737 |
tcatgacagttaacttaggtagctagaaactgccaaaatgtgtctatatataggacctaaattaacatatccatatggtatattcagaaaaagagcaaat |
43483836 |
T |
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| Q |
409 |
catatactacacaagtctaaattgcttttaacttttaagatggttgcttcacaaaacaaacgcattctacaagtgatttttgttctcctttgcttcttct |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43483837 |
catatactacacaagtctaaattgcttttaacttttaagatggttgcttcacaaaacaaacgcattctacaagtgatttttgttctcctttgcttcttct |
43483936 |
T |
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| Q |
509 |
ccatccatattcaagttaaaggtaccttttgcttcaaatattacaatattgg |
560 |
Q |
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| T |
43483937 |
ccatccatattcaagttaaaggtaccttttgcttcaaatattacaacattgg |
43483988 |
T |
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