View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_7 (Length: 548)
Name: NF7926_low_7
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 74 - 532
Target Start/End: Original strand, 35062995 - 35063453
Alignment:
| Q |
74 |
agacctacatattgcatggaagatgtataatctgccggtaaggtactgttcttaggttcagtttccacaaccttattttcaaccccttgtctgcaaatag |
173 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35062995 |
agacctacatattgcatggaagatgtataatctgccggtaaggtactgttcttaggttcagtttccacaaccttattttcaactccttgtctgcaaatag |
35063094 |
T |
|
| Q |
174 |
caaaatacagttgcaactcaagaacacacaacacactttatttcataaatgaacaatgcagtttctaattttgccaaagtatgaaaaattgatgactgcc |
273 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35063095 |
caaaatacagttgcaactcaagaacacacaacacactttatttcataaatgaacaatgcagtttctaattttgccaaagtatgaaaaattgatgactgcc |
35063194 |
T |
|
| Q |
274 |
tatttagacaaagttacatacacaatgcatgatcattggtaaataaatcaaacaagagtaatgagattaaaggtttcagaaagtacttttgttcaataac |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35063195 |
tatttagacaaagttacatacacaatgcatgatcattggtaaagaaatcaaacaagagtaatgagattaaaggtttcagaaagtacttttgttcaataac |
35063294 |
T |
|
| Q |
374 |
aatcggtacacgtggcagtcctggaacccgtcgaattaacactgacgtatttttagaaatcaacatttcttcatcaagatattctgaaattccaaaagat |
473 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35063295 |
aattggtacacgtggcagtcctggaacccgtcgaattaacactgacgtatttttagaaatcaacatttcttcatcgagatattctgaaattccaaaagat |
35063394 |
T |
|
| Q |
474 |
aagtcaactataaaacattgtaaatgtgttatttcattaagcctaatataaccactatg |
532 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
35063395 |
aagtcaactataaaacattgtaaatgtgctatttcattaagcctaatataaccaatatg |
35063453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 73 - 532
Target Start/End: Original strand, 43024340 - 43024806
Alignment:
| Q |
73 |
gagacctacatattgcatggaagatgtataatctgccggtaaggtactgttcttaggttcagtttccacaaccttattttcaaccccttgtctgcaaata |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
43024340 |
gagacctacatattgcatggaagatgtataatctaccggtaaggtactgttctcaggttcagtttccacaaccttactttcaacctcttgtctgcaaata |
43024439 |
T |
|
| Q |
173 |
gcaaaatacagttgcaactcaagaacacacaacacactttatttcataaatgaacaatgcagtttctaattttgccaaagtatgaaaaattgatgactgc |
272 |
Q |
| |
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|||||||| |||| |||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||| |||||||| |||||||||||||| |
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|
| T |
43024440 |
gcaaaataaagttacaactcaagaacacacaacatactttatttcacacatgaacaatgcaatttctaattttgcctaagtatgacaaattgatgactgc |
43024539 |
T |
|
| Q |
273 |
ctatttaga-caaagtt------acatacacaatgcatgatcattggtaaataaatcaaacaagagtaatgagattaaaggtttcagaaagtacttttgt |
365 |
Q |
| |
|
|||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43024540 |
ctatttagttcatactttatttcacatacacaatgcatgatcattggtaaataaatcaaacaagagtaatgagattaaaggtttgagaaagtacttttgt |
43024639 |
T |
|
| Q |
366 |
tcaataacaatcggtacacgtggcagtcctggaacccgtcgaattaacactgacgtatttttagaaatcaacatttcttcatcaagatattctgaaattc |
465 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
43024640 |
tcaataacaatcggtaaacgtggcagtcctggaacccgtcgaattaacactgatgtatttttaggaatcaacatttcttcatcatgatattctgaaattc |
43024739 |
T |
|
| Q |
466 |
caaaagataagtcaactataaaacattgtaaatgtgttatttcattaagcctaatataaccactatg |
532 |
Q |
| |
|
||||||| ||| ||| ||||||||| |||||||||| |||||||| |||||||||||||| |||||| |
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|
| T |
43024740 |
caaaagacaagccaaatataaaacactgtaaatgtgctatttcatgaagcctaatataacaactatg |
43024806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 73 - 532
Target Start/End: Original strand, 42814003 - 42814452
Alignment:
| Q |
73 |
gagacctacatattgcatggaagatgtataatctgccggtaaggtactgttcttaggttcagtttccacaaccttattttcaaccccttgtctgcaaata |
172 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
42814003 |
gagacttacatattgcatggaagatgtataatctgccggtaaggtactattctcaggttcagtttccacaaccttattttcaaactcttgtctgcaaata |
42814102 |
T |
|
| Q |
173 |
gcaaaatacagttgcaactcaagaacacacaacacactttatttcataaatgaacaatgcagtttctaattttgccaaagtatgaaaaattgatgactgc |
272 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42814103 |
gcaaaatacagttacaactcaagaacagacaacatactttatttcacaaatgaacaatacagtttctaattttgccaaagtatgacaaattgatgactgc |
42814202 |
T |
|
| Q |
273 |
ctatttagacaaagttacatacacaatgcatgatcattggtaaataaatcaaacaagagtaatgagattaaaggtttcagaaagtacttttgttcaataa |
372 |
Q |
| |
|
||||||| || |||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |
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|
| T |
42814203 |
ctatttatac--agttacatacacaatgcatgattatttgtaaacaaatcaaacaagagtaatgagattaaaggtttgagaaagtactttttttcagtaa |
42814300 |
T |
|
| Q |
373 |
caatcggtacacgtggcagtcctggaacccgtcgaattaacactgacgtatttttagaaatcaacatttcttcatcaagatattctgaaattccaaaaga |
472 |
Q |
| |
|
||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42814301 |
caatcggtaaacatggccgtcctggaacccgtcgaattaacactgacgtatttttaggaatcaacatttcttcatcatgatattctgaaattccaaaag- |
42814399 |
T |
|
| Q |
473 |
taagtcaactataaaacattgtaaatgtgttatttcattaagcctaatataaccactatg |
532 |
Q |
| |
|
|| |||||||| |||||||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
42814400 |
-------acaataaaacactgtaaatgtgctatttcatgaagcctaataaaaccactatg |
42814452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 336 - 468
Target Start/End: Complemental strand, 41563322 - 41563190
Alignment:
| Q |
336 |
gagattaaaggtttcagaaagtacttttgttcaataacaatcggtacacgtggcagtcctggaacccgtcgaattaacactgacgtatttttagaaatca |
435 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||| ||||||| |||| |||||| ||||||||||||| |||||||||||||| |||||||||| |||| |
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|
| T |
41563322 |
gagattaaaggtttgagatagtactcttgttcggtaacaattggtaaacgtggtcgtcctggaacccgacgaattaacactgaggtatttttagggatca |
41563223 |
T |
|
| Q |
436 |
acatttcttcatcaagatattctgaaattccaa |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41563222 |
acatttcttcatcaagatattctgaaattccaa |
41563190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 41563603 - 41563475
Alignment:
| Q |
73 |
gagacctacatattgcatggaagatgtataatctgccggtaaggtactgttcttaggttcagtttccacaaccttattttcaaccccttgtctgcaaata |
172 |
Q |
| |
|
||||| |||||||| ||||| ||| ||| ||| || |||||| ||||||| ||||||||| ||||| ||||||||||| ||| ||||||||||| | |
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|
| T |
41563603 |
gagacttacatatttcatggcagacatatcatcagctggtaagctactgttagcaggttcagtgtccaccaccttattttccaccttttgtctgcaaaaa |
41563504 |
T |
|
| Q |
173 |
gcaaaatacagttgcaactcaagaacaca |
201 |
Q |
| |
|
|||||||||| || ||||||||||||| |
|
|
| T |
41563503 |
acaaaatacagccgcgactcaagaacaca |
41563475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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