View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7926_low_8 (Length: 537)
Name: NF7926_low_8
Description: NF7926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7926_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 13 - 519
Target Start/End: Complemental strand, 5639137 - 5638630
Alignment:
| Q |
13 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639137 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
5639038 |
T |
|
| Q |
113 |
aaaatgaaagaagttccgtgaaaaacactccctctgaactcaaatttaagtaaaattaactaaatacgtactaagtaagaatattagttaagcttgctta |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
5639037 |
aaaatgaaagaagttccgtgaaaaacactccctccgaactcaaatttaagtaaaattaactaaatacgtactaattaagaatattagttaaccttgctta |
5638938 |
T |
|
| Q |
213 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctc-tcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638937 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctcttcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
5638838 |
T |
|
| Q |
312 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactannnnnnnnacttaaatt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5638837 |
tttaacactaattgaaatataacagtaatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactattttttttacttaaatt |
5638738 |
T |
|
| Q |
412 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638737 |
tgagtttggaggaagtaaattcttaatttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagta |
5638638 |
T |
|
| Q |
512 |
tcacatat |
519 |
Q |
| |
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|||||||| |
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| T |
5638637 |
tcacatat |
5638630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 22965327 - 22965261
Alignment:
| Q |
33 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaagg |
99 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22965327 |
gttatgcacatcacttaatcatgcaaattttatagttcggacctgcaaattcaggtattaatgaagg |
22965261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 38954590 - 38954654
Alignment:
| Q |
33 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaa |
97 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38954590 |
gttatgcacatcgcttaatcatgcaaattttatagtttggacctgcaaattcaggtattaatgaa |
38954654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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