View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7927_high_1 (Length: 592)
Name: NF7927_high_1
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 17 - 578
Target Start/End: Complemental strand, 38568705 - 38568144
Alignment:
| Q |
17 |
agaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568705 |
agaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattg |
38568606 |
T |
|
| Q |
117 |
tatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttcttattc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
38568605 |
tatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttatagggagaatgtcaggtgatactgttcttattc |
38568506 |
T |
|
| Q |
217 |
aagatgccatgggtgagaaggtatgaattttagagttgaatgtaaaatatgattttggagtaaatggttactttgaatctatgaaccacgagcacggaca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568505 |
aagatgccatgggtgagaaggtatgaattttagagttgaatgtaaaatatgattttggagtaaatggttactttgaatctatgaaccacgagcacggaca |
38568406 |
T |
|
| Q |
317 |
ccaaacacagtacgtcaatactagtagtaatttgaaaaatagaataattgaatgtaatcgcatattagtgtcgtttggacaccggacacaaatttaatgt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568405 |
ccaaacacagtacgtcaatactagtagtaatttgaaaaatagaataattgaatgtaatcgcatattagtgtcgtttggacaccggacacaaatttaatgt |
38568306 |
T |
|
| Q |
417 |
gaagtgtctactacatagctttgaatttatttttctgaatgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaaca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568305 |
gaagtgtctactacatagctttgaatttatttttctgaatgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaaca |
38568206 |
T |
|
| Q |
517 |
tttgttggcggttttgtgatagcatttagcagaggatggcttcttactgttgtattgatgtc |
578 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38568205 |
tttgttggcggttttgtgatagcatttaccagaggatggcttcttactgttgtattgatgtc |
38568144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 38527401 - 38527178
Alignment:
| Q |
17 |
agaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattg |
116 |
Q |
| |
|
|||||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527401 |
agaaaagacactaaacttatgataa-ttgttt--gtattttcagaggtgagttgttggatggtaacaggagaaagacaagctgcaagaataagaggattg |
38527305 |
T |
|
| Q |
117 |
tatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttcttattc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38527304 |
tatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaaacacaggagaagttgtaggaagaatgtctggtgatactgttcttattc |
38527205 |
T |
|
| Q |
217 |
aagatgccatgggtgagaaggtatgaa |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38527204 |
aagatgccatgggtgagaaggtatgaa |
38527178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 456 - 578
Target Start/End: Complemental strand, 38527125 - 38527003
Alignment:
| Q |
456 |
tgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttagcagaggatgg |
555 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||| |
|
|
| T |
38527125 |
tgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtgg |
38527026 |
T |
|
| Q |
556 |
cttcttactgttgtattgatgtc |
578 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
38527025 |
cttcttactgttgttatgatgtc |
38527003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 57 - 240
Target Start/End: Original strand, 51197930 - 51198113
Alignment:
| Q |
57 |
tcagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttg |
156 |
Q |
| |
|
|||||| ||| ||| |||||| |||| || || ||||| ||||||||||| ||| | || || | ||||||| || || |||||||| | |||||||| |
|
|
| T |
51197930 |
tcagagttgacttgctggatgattaccggtgagagacaggctgcaagaatcagaagcttatacctccaaacaattttgaggcaagatgtgagtttctttg |
51198029 |
T |
|
| Q |
157 |
ataaagaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
|||| ||||| | || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51198030 |
ataaggaaactaatactggagaggttgttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
51198113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 51144316 - 51144458
Alignment:
| Q |
98 |
tgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtct |
197 |
Q |
| |
|
||||||||| ||||| || ||| | |||||||| || || |||||||| | |||||||||||| ||||| | || ||||| ||||| ||||||||||| |
|
|
| T |
51144316 |
tgcaagaattagagggttatatcttaaaacaattttgaggcaagatgtgagtttctttgataaggaaactaatacgggagaggttgttggaagaatgtca |
51144415 |
T |
|
| Q |
198 |
ggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
51144416 |
ggtgatactgttcttattaaggatgccatgggtgagaaggtat |
51144458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 244
Target Start/End: Original strand, 51211457 - 51211643
Alignment:
| Q |
58 |
cagaggtgagttgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttga |
157 |
Q |
| |
|
|||||||| |||||||||| | ||||| || ||||| |||||||||||||| | ||| || | ||| |||| ||||| |||||| | | ||||||||| |
|
|
| T |
51211457 |
cagaggtgtcttgttggatgatcacaggggagagacaggctgcaagaataagggcattatacctcaaagcaattttaaggcaagatatcagtttctttga |
51211556 |
T |
|
| Q |
158 |
taaagaaacagacacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtatgaat |
244 |
Q |
| |
|
|| |||||| | | || || ||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
51211557 |
caaggaaacaaatagtggtgaggttgttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtatgaat |
51211643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 29938627 - 29938485
Alignment:
| Q |
98 |
tgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtct |
197 |
Q |
| |
|
||||||||| ||||| || || | |||||||| || || |||||||| | || |||||||||||||| |||| ||||| ||||| ||||| ||| | |
|
|
| T |
29938627 |
tgcaagaattagaggcttataccttaaaacaattttgaggcaagatgtgagcttttttgataaagaaactaacactggagaggttgttggaaggatggca |
29938528 |
T |
|
| Q |
198 |
ggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
29938527 |
ggtgacactgttcttattaaagatgccatgggggagaaggtat |
29938485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 51155456 - 51155598
Alignment:
| Q |
98 |
tgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacagacacaggagaagttgtaggaagaatgtct |
197 |
Q |
| |
|
||||||||| ||||| || || | |||||||| || || |||||||| | ||||||||||| ||||| | || ||||| ||||| ||||| ||||| |
|
|
| T |
51155456 |
tgcaagaattagagggttataccttaaaacaattttgaggcaagatgtgagcttctttgataaggaaactaatactggagaggttgttggaaggatgtca |
51155555 |
T |
|
| Q |
198 |
ggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||| |||||||||| |
|
|
| T |
51155556 |
ggtgatacatttctaattaaagatgccatgggggagaaggtat |
51155598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 5764127 - 5764298
Alignment:
| Q |
69 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
168 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| || | | ||||| |||||||| ||||||| || ||| || | |||||||| | |||||| |
|
|
| T |
5764127 |
tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
5764226 |
T |
|
| Q |
169 |
acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
||||||||||||| | || |||||||||||||| || |||| ||||||||||||||||| || ||||||| |
|
|
| T |
5764227 |
acacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
5764298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 5833701 - 5833530
Alignment:
| Q |
69 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
168 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | | ||||| |||||||| |||||| ||| ||| || | |||||||||| |||||| |
|
|
| T |
5833701 |
tgttggatggtaacaggagaaagacaagctgcaaggattcgtagcttgtacttgaaaaccatattacaacaggatattgcattctttgatactgaaacaa |
5833602 |
T |
|
| Q |
169 |
acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
|||||||||| || | || |||||||||||||| || |||| |||||||| || ||||| || ||||||| |
|
|
| T |
5833601 |
acacaggagaggtaattggtagaatgtctggtgacacaattctcattcaagaggctatgggagaaaaggtat |
5833530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 5821051 - 5821211
Alignment:
| Q |
69 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
168 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | || ||||| |||||||| ||| ||| |||||| || | | |||||| | ||| || |
|
|
| T |
5821051 |
tgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaagatatttcctactttgacactgaagcaa |
5821150 |
T |
|
| Q |
169 |
acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatggg |
229 |
Q |
| |
|
|| ||||| ||| | |||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
5821151 |
ccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatggg |
5821211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 49738595 - 49738535
Alignment:
| Q |
180 |
gttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
||||| |||||||| || ||||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
49738595 |
gttgttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat |
49738535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 29331404 - 29331233
Alignment:
| Q |
69 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacag |
168 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| || || | | ||||| |||||||| ||||||| || ||| || | |||||||| | |||||| |
|
|
| T |
29331404 |
tgttggatggtgacaggagaaagacaatctgcgaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
29331305 |
T |
|
| Q |
169 |
acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
240 |
Q |
| |
|
|||||||||| || | | |||||||||||||| || |||| |||||||| || ||||| || ||||||| |
|
|
| T |
29331304 |
acacaggagaggtaattagtagaatgtctggtgacacaattctcattcaagaagctatgggagaaaaggtat |
29331233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University