View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7927_high_12 (Length: 265)
Name: NF7927_high_12
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 12185395 - 12185482
Alignment:
| Q |
19 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctggacaaattttcaaacataatttcaacttagtgatttcaa |
106 |
Q |
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| T |
12185395 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctgttcaaattttcaaacataatttcaagttagtgatttcaa |
12185482 |
T |
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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 12429823 - 12429910
Alignment:
| Q |
19 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctggacaaattttcaaacataatttcaacttagtgatttcaa |
106 |
Q |
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| T |
12429823 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctgttcaaattttcaaacataatttcaagttagtgatttcaa |
12429910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 12173931 - 12174032
Alignment:
| Q |
19 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctggacaaattttcaaacataatttcaacttagtgatttcaacgtatagtacat |
118 |
Q |
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| T |
12173931 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaacataattttaacttagtgatttcagtgtatagtatat |
12174030 |
T |
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| Q |
119 |
ta |
120 |
Q |
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| T |
12174031 |
ta |
12174032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 12418359 - 12418460
Alignment:
| Q |
19 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctggacaaattttcaaacataatttcaacttagtgatttcaacgtatagtacat |
118 |
Q |
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| T |
12418359 |
gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaacataattttaacttagtgatttcagtgtatagtatat |
12418458 |
T |
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| Q |
119 |
ta |
120 |
Q |
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|| |
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| T |
12418459 |
ta |
12418460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 12185497 - 12185592
Alignment:
| Q |
160 |
ttgaaaaacttgaaaaagtgagaagcaattaatatccactatctctttt-aataacaagcaattttccttaagattaccttaagtcttttgtctctgct |
257 |
Q |
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| T |
12185497 |
ttgaaaaatttgaaaaagtgcgaagtaattaat--ccactatctatttttaataacaagcaattttccctaaga-taccttaagtcttctgtttctgct |
12185592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 12429925 - 12430020
Alignment:
| Q |
160 |
ttgaaaaacttgaaaaagtgagaagcaattaatatccactatctctttt-aataacaagcaattttccttaagattaccttaagtcttttgtctctgct |
257 |
Q |
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| T |
12429925 |
ttgaaaaatttgaaaaagtgcgaagtaattaat--ccactatctatttttaataacaagcaattttccctaaga-taccttaagtcttctgtttctgct |
12430020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 5583567 - 5583607
Alignment:
| Q |
19 |
gaggtctccgccaaatccaatatgcaagagttcttcaagta |
59 |
Q |
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| T |
5583567 |
gaggtctccaccaaatccgatattcaagagttcttcaagta |
5583607 |
T |
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