View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7927_high_6 (Length: 369)
Name: NF7927_high_6
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 14288783 - 14288489
Alignment:
| Q |
17 |
acatcctctactactaaaagagattatattatacaccctttcacgtaatgtcaagcaattagaatagaaatcaacctcttatgtgatgttcaacatttac |
116 |
Q |
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| T |
14288783 |
acatcctcgactactaaaatatattatattatacaccctttcacgtaatgtcaagcaattagaa-----atcaatctcttatgtgatgttcaacatttac |
14288689 |
T |
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| Q |
117 |
cacgctgcttattttcatctcaacttttaacacatcttcatctttctgtttgtcgtcctaaccgtcatgatgtcactttattcccaaattctctaaatat |
216 |
Q |
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| T |
14288688 |
cacgctgcttattttcatctcaacttttaacacatcttcatctttctgtttgtcgtcctaatcgtgatgatatcactttattcccaaattctctaaatat |
14288589 |
T |
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| Q |
217 |
gccagcattaaccaaattatctctacggaactttgtcttttgtgtcggagatgatggccgtgttgagcctttttcaccatgtaacaagttgaatagtttg |
316 |
Q |
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| T |
14288588 |
gccagcattaaccaaattatctctacggaactttgtcttttgtgtcggagatgatggccgtgttgagcctttttcatcatgtaacaagttgaatactttg |
14288489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 7140361 - 7140311
Alignment:
| Q |
266 |
gatgatggccgtgttgagcctttttcaccatgtaacaagttgaatagtttg |
316 |
Q |
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| T |
7140361 |
gatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttg |
7140311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 8656276 - 8656226
Alignment:
| Q |
266 |
gatgatggccgtgttgagcctttttcaccatgtaacaagttgaatagtttg |
316 |
Q |
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| T |
8656276 |
gatgatggccgtgttgagcctttttcagcatttaagaggttgaatagtttg |
8656226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 45493337 - 45493299
Alignment:
| Q |
287 |
ttttcaccatgtaacaagttgaatagtttgctttcatgg |
325 |
Q |
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| T |
45493337 |
ttttcatcatgtaacaagttgaatagtttgttttcatgg |
45493299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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