View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7927_high_8 (Length: 330)
Name: NF7927_high_8
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_high_8 |
 | |
|
| [»] scaffold0121 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 9756890 - 9756588
Alignment:
| Q |
18 |
atttcatgccaacaataaaatccacctattatattaatagttggtgatatagaacactcatataatatgctactctctgaccttaattataaataaaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9756890 |
atttcatgccaacaataaaatccacctattatattaatagttggtgatatagaacactcatataatatgctactctctgacattaattataaataaaaat |
9756791 |
T |
|
| Q |
118 |
agatctnnnnnnnttgatgtatttgatttaaaatttgaaccaaatacatccattttcctctaagcttggtgcatgtgttatacgtaaatgaaagattact |
217 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
9756790 |
agatctaaaaaaatttatgtatttgatttaaaatttgaaccaaatacatccattttcctctaagcttggtccatgagttgtacgtaaatgaaagattact |
9756691 |
T |
|
| Q |
218 |
tctttgcaattttaaagggtggccttgtgtgatatacaaaactggtcctactgtgatgatcggaccggacttgagcgaacatttggtggctgagccgttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
9756690 |
tctttgcaattttaaagggtggccttgtatgatatacaaaactggtcctactgtgatgatcggaccggactttagctaacatttggtggctgagccgttc |
9756591 |
T |
|
| Q |
318 |
att |
320 |
Q |
| |
|
||| |
|
|
| T |
9756590 |
att |
9756588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 9336838 - 9336774
Alignment:
| Q |
227 |
ttttaaagggtggccttgtgtgatatacaaaactggtcctactgtgatgatcggaccggacttga |
291 |
Q |
| |
|
||||||||| |||||||||||| || ||||| |||||| ||||| ||||| |||||||| |||| |
|
|
| T |
9336838 |
ttttaaaggatggccttgtgtggtagacaaagctggtcggactgtcatgattggaccggatttga |
9336774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 36747 - 36827
Alignment:
| Q |
20 |
ttcatgccaacaataaaatccacctattatattaatagttggtgatatagaacactcatataatatgctactctctgacct |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36747 |
ttcatgccaacaatcaaatccacctattacattaatagttggtgatatagaacactcatataatatgctactctctgacct |
36827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 36878 - 36920
Alignment:
| Q |
131 |
ttgatgtatttgatttaaaatttgaaccaaatacatccatttt |
173 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
36878 |
ttgatgtatttgatttaaaatttgaactaaataaatccatttt |
36920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University