View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7927_low_1 (Length: 882)
Name: NF7927_low_1
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 105 - 706
Target Start/End: Original strand, 31166147 - 31166748
Alignment:
| Q |
105 |
ttgacaatttctcttcttatcttcaaacatataactctctccaaccttctcatatctttatagaatccaaattccaatttcaaaccattcacttgtcaca |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31166147 |
ttgacaatttctcttcttatcttcaaacatataactctctccaaccttctcatatctttatagaatccaaattccaatttcaaaccattcactcgtcaca |
31166246 |
T |
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| Q |
205 |
cacaacaaagtaatgtctgcagaacaaattctaacgttgttagattccttttggtttgaaacaacaattctaaccaacaaaaatccttcaaaagttgaag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31166247 |
cacaacaaagtaatgtctgcagaacaaattctaacgttgttagattccttttggtttgaaacaacaattctaaccaacaaaaatccttcaaaagttgaag |
31166346 |
T |
|
| Q |
305 |
aaattcttcctcaagacacaaatctcttacttgttccaactccaaaccttgatgttaggttctatagtgaacaaaacttgagcatcataggatctgtttt |
404 |
Q |
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| T |
31166347 |
aaattcttcctcaagacacaaatctcttacttgttccaactccaaaccttgatgttaggttctatagtgagcaaaacttgagcatcataggatctgtttt |
31166446 |
T |
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| Q |
405 |
ctctgattctccatcaccaaattcagtcctcacctcatcaaagcttagaacaatcccttctgaacgagaattcggagaattctcaacggggactagtagt |
504 |
Q |
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| T |
31166447 |
ctctgattctccatcaccaaattcagtcctcacctcatcaaagcttagaacaatcccttctgaacgagaattcggagaattctcaacggggactagtagt |
31166546 |
T |
|
| Q |
505 |
gaaaatcatcatcagaaggaagatgttgcatacactaagaaaaaacaaagccagagttatagaagaaggagaaggaaaagtaggagtttatcagagcttg |
604 |
Q |
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| T |
31166547 |
gaaaatcatcatcagaaggaagatgttgcatacactaagaaaaaacaaagccaaagttatagaagaaggagaaggaaaagtaggagtttatcagagcttg |
31166646 |
T |
|
| Q |
605 |
agtttaaagagctaaaagggtttatggatttgggttttgtgttttctgaggaagacaaagattcaaaattggtttcattgatacctggtttacaaagact |
704 |
Q |
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| T |
31166647 |
agtttaaagagctaaaagggtttatggatttgggttttgtgttttctgaggaagataaagattcaaaattggtttcattgatacctggtttacaaagact |
31166746 |
T |
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| Q |
705 |
tg |
706 |
Q |
| |
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| T |
31166747 |
tg |
31166748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 770 - 864
Target Start/End: Original strand, 31166812 - 31166906
Alignment:
| Q |
770 |
ttttatctgataataagccttatttatctgaggcttgggatgtttttgatcaaagggagagaaaaaatccattagtgaattggagggtaccagat |
864 |
Q |
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| T |
31166812 |
ttttatctgataataagccttatttatctgaggcttgggatgtttttgatcaaagggagagaaaaaatccattagtgaattggagggtaccagat |
31166906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 31166051 - 31166119
Alignment:
| Q |
10 |
tcgaagaatatgggataagccaaaaacagaaaatcataggc--aattaagaaagaaatgtcactctccg |
76 |
Q |
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| T |
31166051 |
tcgaataaaatgggataagccaaaaacagaaaaacagaggcaaaattaagaaagaaatgtcactctccg |
31166119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 589 - 689
Target Start/End: Original strand, 35219408 - 35219508
Alignment:
| Q |
589 |
agtttatcagagcttgagtttaaagagctaaaagggtttatggatttgggttttgtgttttctgaggaagacaaagattcaaaattggtttcattgatac |
688 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |
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| T |
35219408 |
agtttatcagagcttgagtttaaggagctaaaagggtttatggatttaggttttgtgttttctgaggaagataaagattcaggattggtttctttgatac |
35219507 |
T |
|
| Q |
689 |
c |
689 |
Q |
| |
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| |
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|
| T |
35219508 |
c |
35219508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 701
Target Start/End: Complemental strand, 5183534 - 5183421
Alignment:
| Q |
588 |
gagtttatcagagcttgagtttaaagagctaaaagggtttatggatttgggttttgtgttttctgaggaagacaaagattcaaaattggtttcattgata |
687 |
Q |
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|||||||||||| ||||||||| | ||| |||||||||| |||||| | |||||||| || || |||||||| ||||| ||| ||||||||| | ||| |
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| T |
5183534 |
gagtttatcagaccttgagtttgaggaggtaaaagggttcatggatcttggttttgttttctcagaggaagataaagacacaagcttggtttcaatcata |
5183435 |
T |
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| Q |
688 |
cctggtttacaaag |
701 |
Q |
| |
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|||||||| ||||| |
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| T |
5183434 |
cctggtttgcaaag |
5183421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 581 - 706
Target Start/End: Complemental strand, 35968893 - 35968768
Alignment:
| Q |
581 |
aaagtaggagtttatcagagcttgagtttaaagagctaaaagggtttatggatttgggttttgtgttttctgaggaagacaaagattcaaaattggtttc |
680 |
Q |
| |
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|||||| ||||||||| || ||||| ||| | ||||||||||| ||||||||| |||||||||| || || |||||||| |||||||||| |||||| |
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| T |
35968893 |
aaagtaagagtttatctgaccttgaatttgaggagctaaaaggttttatggatctgggttttgttttctcagaggaagataaagattcaagcttggttga |
35968794 |
T |
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| Q |
681 |
attgatacctggtttacaaagacttg |
706 |
Q |
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| | || ||||| ||||||||||||| |
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| T |
35968793 |
aattattcctgggttacaaagacttg |
35968768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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