View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7927_low_12 (Length: 270)
Name: NF7927_low_12
Description: NF7927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7927_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 39085172 - 39085410
Alignment:
| Q |
18 |
aaaaagaagttgtaactaatttctaaagacttataactcactgactgttagctcacaatccaaaaattacgtaaatgtaaagaag-aacacaaatgtttt |
116 |
Q |
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| T |
39085172 |
aaaaagaagttgtaactaatttctaaagacttataactcactgactgttagctcacaatccaaaaattacgtaaatgtaaagaaggaacacaaatgtttt |
39085271 |
T |
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| Q |
117 |
aaagccacgtccccttgcatcccaacaccgatatgtgtaccctatagtggatgactaattgattgcgcatggttcaaaggacaatcaaatgtgtcccact |
216 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39085272 |
aaatccacgtccccttgcatcccaacaccgatgtgtgtaccctatagtggatgactaattgattgcgcatggttcaaaggacaatcaaatgtgtcccact |
39085371 |
T |
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| Q |
217 |
agtacaatgagacatcccaaacaactgttctcctaagta |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39085372 |
agtacaatgagacatcccaaacaactgttctcctaagta |
39085410 |
T |
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